PORTNAME=	nibabel
DISTVERSION=	5.4.2
CATEGORIES=	science python
MASTER_SITES=	PYPI
PKGNAMEPREFIX=	${PYTHON_PKGNAMEPREFIX}

MAINTAINER=	yuri@FreeBSD.org
COMMENT=	Read/write some common neuroimaging file formats
WWW=		https://nipy.org/nibabel/

LICENSE=	MIT
LICENSE_FILE=	${WRKSRC}/COPYING

BUILD_DEPENDS=	${PYTHON_PKGNAMEPREFIX}hatch-vcs>0:devel/py-hatch-vcs@${PY_FLAVOR} \
		${PYTHON_PKGNAMEPREFIX}hatchling>0:devel/py-hatchling@${PY_FLAVOR}
RUN_DEPENDS=	${PYTHON_PKGNAMEPREFIX}numpy>=1.25:math/py-numpy@${PY_FLAVOR} \
		${PYTHON_PKGNAMEPREFIX}packaging>=17:devel/py-packaging@${PY_FLAVOR}
py311_RUN_DEPENDS=	${PYTHON_PKGNAMEPREFIX}importlib-resources>=5.12:devel/py-importlib-resources@${PY_FLAVOR}
py312_RUN_DEPENDS=	${PYTHON_PKGNAMEPREFIX}typing-extensions>=4.6:devel/py-typing-extensions@${PY_FLAVOR}
TEST_DEPENDS=	${PYTHON_PKGNAMEPREFIX}pytest-cov>0:devel/py-pytest-cov@${PY_FLAVOR} \
		${PYTHON_PKGNAMEPREFIX}pytest-doctestplus>0:devel/py-pytest-doctestplus@${PY_FLAVOR} \
		${PYTHON_PKGNAMEPREFIX}pytest-httpserver>0:devel/py-pytest-httpserver@${PY_FLAVOR} \
		${PYTHON_PKGNAMEPREFIX}pytest-xdist>0:devel/py-pytest-xdist@${PY_FLAVOR}
TEST_DEPENDS+=	${PYTHON_PKGNAMEPREFIX}pydicom>0:science/py-pydicom@${PY_FLAVOR}

USES=		python
USE_PYTHON=	pep517 concurrent autoplist pytest # 2 test fail, 1 error, see https://github.com/nipy/nibabel/issues/1386

NO_ARCH=	yes

TEST_ENV=	${MAKE_ENV} PATH=${STAGEDIR}${PREFIX}/bin

post-install:
	@${REINPLACE_CMD} -i '' -e 's|#!python|#!${PYTHON_CMD}|' \
		${STAGEDIR}${PYTHONPREFIX_SITELIBDIR}/nibabel/cmdline/diff.py  \
		${STAGEDIR}${PYTHONPREFIX_SITELIBDIR}/nibabel/cmdline/ls.py 

# tests as of 5.4.2: 5905 passed, 48 skipped, 37 xfailed, 7 xpassed, 27004 warnings in 64.30s (0:01:04)

.include <bsd.port.mk>