bin/plumed bin/plumed-config bin/plumed-patch include/plumed/asmjit/arch.h include/plumed/asmjit/arm.h include/plumed/asmjit/asmjit.h include/plumed/asmjit/asmjit_apibegin.h include/plumed/asmjit/asmjit_apiend.h include/plumed/asmjit/asmjit_build.h include/plumed/asmjit/assembler.h include/plumed/asmjit/base.h include/plumed/asmjit/codebuilder.h include/plumed/asmjit/codecompiler.h include/plumed/asmjit/codeemitter.h include/plumed/asmjit/codeholder.h include/plumed/asmjit/constpool.h include/plumed/asmjit/cpuinfo.h include/plumed/asmjit/func.h include/plumed/asmjit/globals.h include/plumed/asmjit/inst.h include/plumed/asmjit/logging.h include/plumed/asmjit/misc_p.h include/plumed/asmjit/moved_string.h include/plumed/asmjit/operand.h include/plumed/asmjit/osutils.h include/plumed/asmjit/regalloc_p.h include/plumed/asmjit/runtime.h include/plumed/asmjit/simdtypes.h include/plumed/asmjit/utils.h include/plumed/asmjit/vmem.h include/plumed/asmjit/x86.h include/plumed/asmjit/x86assembler.h include/plumed/asmjit/x86builder.h include/plumed/asmjit/x86compiler.h include/plumed/asmjit/x86emitter.h include/plumed/asmjit/x86globals.h include/plumed/asmjit/x86inst.h include/plumed/asmjit/x86instimpl_p.h include/plumed/asmjit/x86internal_p.h include/plumed/asmjit/x86logging_p.h include/plumed/asmjit/x86misc.h include/plumed/asmjit/x86operand.h include/plumed/asmjit/x86regalloc_p.h include/plumed/asmjit/zone.h include/plumed/bias/Bias.h include/plumed/bias/ReweightBase.h include/plumed/blas/blas.h include/plumed/blas/def_external.h include/plumed/blas/def_internal.h include/plumed/blas/real.h include/plumed/cltools/CLTool.h include/plumed/colvar/Colvar.h include/plumed/colvar/ColvarShortcut.h include/plumed/colvar/CoordinationBase.h include/plumed/colvar/MultiColvarTemplate.h include/plumed/colvar/PathMSDBase.h include/plumed/colvar/RMSDVector.h include/plumed/config/Config.h include/plumed/config/version.h include/plumed/core/Action.h include/plumed/core/ActionAnyorder.h include/plumed/core/ActionAtomistic.h include/plumed/core/ActionForInterface.h include/plumed/core/ActionPilot.h include/plumed/core/ActionRegister.h include/plumed/core/ActionSet.h include/plumed/core/ActionSetup.h include/plumed/core/ActionShortcut.h include/plumed/core/ActionToGetData.h include/plumed/core/ActionToPutData.h include/plumed/core/ActionWithArguments.h include/plumed/core/ActionWithMatrix.h include/plumed/core/ActionWithValue.h include/plumed/core/ActionWithVector.h include/plumed/core/ActionWithVirtualAtom.h include/plumed/core/CLTool.h include/plumed/core/CLToolMain.h include/plumed/core/CLToolRegister.h include/plumed/core/Colvar.h include/plumed/core/DataPassingObject.h include/plumed/core/DataPassingTools.h include/plumed/core/DomainDecomposition.h include/plumed/core/ExchangePatterns.h include/plumed/core/FlexibleBin.h include/plumed/core/GREX.h include/plumed/core/GenericMolInfo.h include/plumed/core/Group.h include/plumed/core/ModuleMap.h include/plumed/core/PbcAction.h include/plumed/core/PlumedMain.h include/plumed/core/PlumedMainInitializer.h include/plumed/core/RegisterBase.h include/plumed/core/TargetDist.h include/plumed/core/Value.h include/plumed/core/WithCmd.h include/plumed/function/Between.h include/plumed/function/Combine.h include/plumed/function/Custom.h include/plumed/function/Function.h include/plumed/function/FunctionOfMatrix.h include/plumed/function/FunctionOfScalar.h include/plumed/function/FunctionOfVector.h include/plumed/function/FunctionShortcut.h include/plumed/function/FunctionTemplateBase.h include/plumed/function/LessThan.h include/plumed/function/MoreThan.h include/plumed/function/Sum.h include/plumed/gridtools/ActionWithGrid.h include/plumed/gridtools/EvaluateGridFunction.h include/plumed/gridtools/FunctionOfGrid.h include/plumed/gridtools/GridCoordinatesObject.h include/plumed/gridtools/GridSearch.h include/plumed/gridtools/Interpolator.h include/plumed/gridtools/RDF.h include/plumed/isdb/MetainferenceBase.h include/plumed/lapack/def_external.h include/plumed/lapack/def_internal.h include/plumed/lapack/lapack.h include/plumed/lapack/lapack_limits.h include/plumed/lapack/real.h include/plumed/lepton/CompiledExpression.h include/plumed/lepton/CustomFunction.h include/plumed/lepton/Exception.h include/plumed/lepton/ExpressionProgram.h include/plumed/lepton/ExpressionTreeNode.h include/plumed/lepton/Lepton.h include/plumed/lepton/MSVC_erfc.h include/plumed/lepton/Operation.h include/plumed/lepton/ParsedExpression.h include/plumed/lepton/Parser.h include/plumed/lepton/windowsIncludes.h include/plumed/matrixtools/MatrixOperationBase.h include/plumed/molfile/Gromacs.h include/plumed/molfile/endianswap.h include/plumed/molfile/fastio.h include/plumed/molfile/largefiles.h include/plumed/molfile/libmolfile_plugin.h include/plumed/molfile/molfile_plugin.h include/plumed/molfile/periodic_table.h include/plumed/molfile/readpdb.h include/plumed/molfile/vmdplugin.h include/plumed/multicolvar/MultiColvarShortcuts.h include/plumed/secondarystructure/SecondaryStructureRMSD.h include/plumed/setup/ActionSetup.h include/plumed/small_vector/small_vector.h include/plumed/tools/Angle.h include/plumed/tools/AtomNumber.h include/plumed/tools/BiasRepresentation.h include/plumed/tools/Brent1DRootSearch.h include/plumed/tools/CheckInRange.h include/plumed/tools/Citations.h include/plumed/tools/Communicator.h include/plumed/tools/ConjugateGradient.h include/plumed/tools/DLLoader.h include/plumed/tools/ERMSD.h include/plumed/tools/Exception.h include/plumed/tools/File.h include/plumed/tools/FileBase.h include/plumed/tools/ForwardDecl.h include/plumed/tools/Grid.h include/plumed/tools/HistogramBead.h include/plumed/tools/IFile.h include/plumed/tools/KernelFunctions.h include/plumed/tools/Keywords.h include/plumed/tools/LatticeReduction.h include/plumed/tools/LeptonCall.h include/plumed/tools/LinkCells.h include/plumed/tools/Log.h include/plumed/tools/LoopUnroller.h include/plumed/tools/Matrix.h include/plumed/tools/MatrixSquareBracketsAccess.h include/plumed/tools/MergeVectorTools.h include/plumed/tools/Minimise1DBrent.h include/plumed/tools/MinimiseBase.h include/plumed/tools/MolDataClass.h include/plumed/tools/MultiValue.h include/plumed/tools/NeighborList.h include/plumed/tools/OFile.h include/plumed/tools/OpenMP.h include/plumed/tools/PDB.h include/plumed/tools/Pbc.h include/plumed/tools/PlumedHandle.h include/plumed/tools/RMSD.h include/plumed/tools/Random.h include/plumed/tools/RootFindingBase.h include/plumed/tools/Stopwatch.h include/plumed/tools/Subprocess.h include/plumed/tools/SwitchingFunction.h include/plumed/tools/Tensor.h include/plumed/tools/Tools.h include/plumed/tools/Torsion.h include/plumed/tools/Tree.h include/plumed/tools/TypesafePtr.h include/plumed/tools/Units.h include/plumed/tools/Vector.h include/plumed/tools/h36.h include/plumed/vatom/ActionWithVirtualAtom.h include/plumed/wrapper/Plumed.h include/plumed/xdrfile/xdrfile.h include/plumed/xdrfile/xdrfile_trr.h include/plumed/xdrfile/xdrfile_xtc.h lib/libplumed.a lib/libplumed.so lib/libplumedKernel.so lib/libplumedWrapper.a lib/plumed/fortran/plumed.f90 lib/plumed/fortran/plumed_f08.f90 lib/plumed/json/syntax.json lib/plumed/modulefile lib/plumed/patches/gromacs-2022.5.config lib/plumed/patches/gromacs-2022.5.diff/src/gromacs/CMakeLists.txt lib/plumed/patches/gromacs-2022.5.diff/src/gromacs/CMakeLists.txt.preplumed lib/plumed/patches/gromacs-2022.5.diff/src/gromacs/mdlib/expanded.cpp lib/plumed/patches/gromacs-2022.5.diff/src/gromacs/mdlib/expanded.cpp.preplumed lib/plumed/patches/gromacs-2022.5.diff/src/gromacs/mdlib/expanded.h lib/plumed/patches/gromacs-2022.5.diff/src/gromacs/mdlib/expanded.h.preplumed lib/plumed/patches/gromacs-2022.5.diff/src/gromacs/mdlib/sim_util.cpp lib/plumed/patches/gromacs-2022.5.diff/src/gromacs/mdlib/sim_util.cpp.preplumed lib/plumed/patches/gromacs-2022.5.diff/src/gromacs/mdrun/legacymdrunoptions.cpp lib/plumed/patches/gromacs-2022.5.diff/src/gromacs/mdrun/legacymdrunoptions.cpp.preplumed lib/plumed/patches/gromacs-2022.5.diff/src/gromacs/mdrun/legacymdrunoptions.h lib/plumed/patches/gromacs-2022.5.diff/src/gromacs/mdrun/legacymdrunoptions.h.preplumed lib/plumed/patches/gromacs-2022.5.diff/src/gromacs/mdrun/md.cpp lib/plumed/patches/gromacs-2022.5.diff/src/gromacs/mdrun/md.cpp.preplumed lib/plumed/patches/gromacs-2022.5.diff/src/gromacs/mdrun/minimize.cpp lib/plumed/patches/gromacs-2022.5.diff/src/gromacs/mdrun/minimize.cpp.preplumed lib/plumed/patches/gromacs-2022.5.diff/src/gromacs/mdrun/replicaexchange.cpp lib/plumed/patches/gromacs-2022.5.diff/src/gromacs/mdrun/replicaexchange.cpp.preplumed lib/plumed/patches/gromacs-2022.5.diff/src/gromacs/mdrun/replicaexchange.h lib/plumed/patches/gromacs-2022.5.diff/src/gromacs/mdrun/replicaexchange.h.preplumed lib/plumed/patches/gromacs-2022.5.diff/src/gromacs/mdrun/rerun.cpp lib/plumed/patches/gromacs-2022.5.diff/src/gromacs/mdrun/rerun.cpp.preplumed lib/plumed/patches/gromacs-2022.5.diff/src/gromacs/mdrun/runner.cpp lib/plumed/patches/gromacs-2022.5.diff/src/gromacs/mdrun/runner.cpp.preplumed lib/plumed/patches/gromacs-2022.5.diff/src/gromacs/modularsimulator/expandedensembleelement.cpp lib/plumed/patches/gromacs-2022.5.diff/src/gromacs/modularsimulator/expandedensembleelement.cpp.preplumed lib/plumed/patches/gromacs-2023.5.config lib/plumed/patches/gromacs-2023.5.diff/src/gromacs/CMakeLists.txt lib/plumed/patches/gromacs-2023.5.diff/src/gromacs/CMakeLists.txt.preplumed lib/plumed/patches/gromacs-2023.5.diff/src/gromacs/mdlib/expanded.cpp lib/plumed/patches/gromacs-2023.5.diff/src/gromacs/mdlib/expanded.cpp.preplumed lib/plumed/patches/gromacs-2023.5.diff/src/gromacs/mdlib/expanded.h lib/plumed/patches/gromacs-2023.5.diff/src/gromacs/mdlib/expanded.h.preplumed lib/plumed/patches/gromacs-2023.5.diff/src/gromacs/mdlib/sim_util.cpp lib/plumed/patches/gromacs-2023.5.diff/src/gromacs/mdlib/sim_util.cpp.preplumed lib/plumed/patches/gromacs-2023.5.diff/src/gromacs/mdrun/legacymdrunoptions.cpp lib/plumed/patches/gromacs-2023.5.diff/src/gromacs/mdrun/legacymdrunoptions.cpp.preplumed lib/plumed/patches/gromacs-2023.5.diff/src/gromacs/mdrun/legacymdrunoptions.h lib/plumed/patches/gromacs-2023.5.diff/src/gromacs/mdrun/legacymdrunoptions.h.preplumed lib/plumed/patches/gromacs-2023.5.diff/src/gromacs/mdrun/md.cpp lib/plumed/patches/gromacs-2023.5.diff/src/gromacs/mdrun/md.cpp.preplumed lib/plumed/patches/gromacs-2023.5.diff/src/gromacs/mdrun/minimize.cpp lib/plumed/patches/gromacs-2023.5.diff/src/gromacs/mdrun/minimize.cpp.preplumed lib/plumed/patches/gromacs-2023.5.diff/src/gromacs/mdrun/replicaexchange.cpp lib/plumed/patches/gromacs-2023.5.diff/src/gromacs/mdrun/replicaexchange.cpp.preplumed lib/plumed/patches/gromacs-2023.5.diff/src/gromacs/mdrun/replicaexchange.h lib/plumed/patches/gromacs-2023.5.diff/src/gromacs/mdrun/replicaexchange.h.preplumed lib/plumed/patches/gromacs-2023.5.diff/src/gromacs/mdrun/rerun.cpp lib/plumed/patches/gromacs-2023.5.diff/src/gromacs/mdrun/rerun.cpp.preplumed lib/plumed/patches/gromacs-2023.5.diff/src/gromacs/mdrun/runner.cpp lib/plumed/patches/gromacs-2023.5.diff/src/gromacs/mdrun/runner.cpp.preplumed lib/plumed/patches/gromacs-2023.5.diff/src/gromacs/modularsimulator/expandedensembleelement.cpp lib/plumed/patches/gromacs-2023.5.diff/src/gromacs/modularsimulator/expandedensembleelement.cpp.preplumed lib/plumed/patches/gromacs-2023.5.diff/src/gromacs/taskassignment/decidegpuusage.cpp lib/plumed/patches/gromacs-2023.5.diff/src/gromacs/taskassignment/decidegpuusage.cpp.preplumed lib/plumed/patches/gromacs-2023.5.diff/src/gromacs/taskassignment/include/gromacs/taskassignment/decidegpuusage.h lib/plumed/patches/gromacs-2023.5.diff/src/gromacs/taskassignment/include/gromacs/taskassignment/decidegpuusage.h.preplumed lib/plumed/patches/gromacs-2024.3.config lib/plumed/patches/gromacs-2024.3.diff/src/gromacs/CMakeLists.txt lib/plumed/patches/gromacs-2024.3.diff/src/gromacs/CMakeLists.txt.preplumed lib/plumed/patches/gromacs-2024.3.diff/src/gromacs/mdlib/expanded.cpp lib/plumed/patches/gromacs-2024.3.diff/src/gromacs/mdlib/expanded.cpp.preplumed lib/plumed/patches/gromacs-2024.3.diff/src/gromacs/mdlib/expanded.h lib/plumed/patches/gromacs-2024.3.diff/src/gromacs/mdlib/expanded.h.preplumed lib/plumed/patches/gromacs-2024.3.diff/src/gromacs/mdlib/sim_util.cpp lib/plumed/patches/gromacs-2024.3.diff/src/gromacs/mdlib/sim_util.cpp.preplumed lib/plumed/patches/gromacs-2024.3.diff/src/gromacs/mdrun/legacymdrunoptions.cpp lib/plumed/patches/gromacs-2024.3.diff/src/gromacs/mdrun/legacymdrunoptions.cpp.preplumed lib/plumed/patches/gromacs-2024.3.diff/src/gromacs/mdrun/legacymdrunoptions.h lib/plumed/patches/gromacs-2024.3.diff/src/gromacs/mdrun/legacymdrunoptions.h.preplumed lib/plumed/patches/gromacs-2024.3.diff/src/gromacs/mdrun/md.cpp lib/plumed/patches/gromacs-2024.3.diff/src/gromacs/mdrun/md.cpp.preplumed lib/plumed/patches/gromacs-2024.3.diff/src/gromacs/mdrun/minimize.cpp lib/plumed/patches/gromacs-2024.3.diff/src/gromacs/mdrun/minimize.cpp.preplumed lib/plumed/patches/gromacs-2024.3.diff/src/gromacs/mdrun/replicaexchange.cpp lib/plumed/patches/gromacs-2024.3.diff/src/gromacs/mdrun/replicaexchange.cpp.preplumed lib/plumed/patches/gromacs-2024.3.diff/src/gromacs/mdrun/replicaexchange.h lib/plumed/patches/gromacs-2024.3.diff/src/gromacs/mdrun/replicaexchange.h.preplumed lib/plumed/patches/gromacs-2024.3.diff/src/gromacs/mdrun/rerun.cpp lib/plumed/patches/gromacs-2024.3.diff/src/gromacs/mdrun/rerun.cpp.preplumed lib/plumed/patches/gromacs-2024.3.diff/src/gromacs/mdrun/runner.cpp lib/plumed/patches/gromacs-2024.3.diff/src/gromacs/mdrun/runner.cpp.preplumed lib/plumed/patches/gromacs-2024.3.diff/src/gromacs/modularsimulator/expandedensembleelement.cpp lib/plumed/patches/gromacs-2024.3.diff/src/gromacs/modularsimulator/expandedensembleelement.cpp.preplumed lib/plumed/patches/gromacs-2024.3.diff/src/gromacs/taskassignment/decidegpuusage.cpp lib/plumed/patches/gromacs-2024.3.diff/src/gromacs/taskassignment/decidegpuusage.cpp.preplumed lib/plumed/patches/gromacs-2024.3.diff/src/gromacs/taskassignment/include/gromacs/taskassignment/decidegpuusage.h lib/plumed/patches/gromacs-2024.3.diff/src/gromacs/taskassignment/include/gromacs/taskassignment/decidegpuusage.h.preplumed lib/plumed/patches/gromacs-2025.0.config lib/plumed/patches/gromacs-2025.0.diff/cmake/gmxManagePlumed.cmake lib/plumed/patches/gromacs-2025.0.diff/cmake/gmxManagePlumed.cmake.preplumed lib/plumed/patches/gromacs-2025.0.diff/src/gromacs/applied_forces/plumed/plumedMDModule.cpp lib/plumed/patches/gromacs-2025.0.diff/src/gromacs/applied_forces/plumed/plumedMDModule.cpp.preplumed lib/plumed/patches/gromacs-2025.0.diff/src/gromacs/applied_forces/plumed/plumedOptions.cpp lib/plumed/patches/gromacs-2025.0.diff/src/gromacs/applied_forces/plumed/plumedOptions.cpp.preplumed lib/plumed/patches/gromacs-2025.0.diff/src/gromacs/applied_forces/plumed/plumedOptions.h lib/plumed/patches/gromacs-2025.0.diff/src/gromacs/applied_forces/plumed/plumedOptions.h.preplumed lib/plumed/patches/gromacs-2025.0.diff/src/gromacs/applied_forces/plumed/plumedforceprovider.cpp lib/plumed/patches/gromacs-2025.0.diff/src/gromacs/applied_forces/plumed/plumedforceprovider.cpp.preplumed lib/plumed/patches/gromacs-2025.0.diff/src/gromacs/applied_forces/plumed/plumedforceprovider.h lib/plumed/patches/gromacs-2025.0.diff/src/gromacs/applied_forces/plumed/plumedforceprovider.h.preplumed lib/plumed/patches/gromacs-2025.0.diff/src/gromacs/mdrun/runner.cpp lib/plumed/patches/gromacs-2025.0.diff/src/gromacs/mdrun/runner.cpp.preplumed lib/plumed/patches/gromacs-2025.0.diff/src/gromacs/mdrunutility/mdmodulesnotifiers.h lib/plumed/patches/gromacs-2025.0.diff/src/gromacs/mdrunutility/mdmodulesnotifiers.h.preplumed lib/plumed/patches/namd-2.12.config lib/plumed/patches/namd-2.12.diff lib/plumed/patches/namd-2.13.config lib/plumed/patches/namd-2.13.diff lib/plumed/patches/namd-2.14.config lib/plumed/patches/namd-2.14.diff lib/plumed/patches/patch.sh lib/plumed/patches/qespresso-5.0.2.config lib/plumed/patches/qespresso-5.0.2.diff/PW/src/forces.f90 lib/plumed/patches/qespresso-5.0.2.diff/PW/src/forces.f90.preplumed lib/plumed/patches/qespresso-5.0.2.diff/PW/src/plugin_forces.f90 lib/plumed/patches/qespresso-5.0.2.diff/PW/src/plugin_forces.f90.preplumed lib/plumed/patches/qespresso-5.0.2.diff/PW/src/plugin_initialization.f90 lib/plumed/patches/qespresso-5.0.2.diff/PW/src/plugin_initialization.f90.preplumed lib/plumed/patches/qespresso-5.0.2.diff/PW/src/pwscf.f90 lib/plumed/patches/qespresso-5.0.2.diff/PW/src/pwscf.f90.preplumed lib/plumed/patches/qespresso-6.2.config lib/plumed/patches/qespresso-6.2.diff/PW/src/forces.f90 lib/plumed/patches/qespresso-6.2.diff/PW/src/forces.f90.preplumed lib/plumed/patches/qespresso-6.2.diff/PW/src/plugin_ext_forces.f90 lib/plumed/patches/qespresso-6.2.diff/PW/src/plugin_ext_forces.f90.preplumed lib/plumed/patches/qespresso-6.2.diff/PW/src/plugin_initialization.f90 lib/plumed/patches/qespresso-6.2.diff/PW/src/plugin_initialization.f90.preplumed lib/plumed/patches/qespresso-6.2.diff/PW/src/run_pwscf.f90 lib/plumed/patches/qespresso-6.2.diff/PW/src/run_pwscf.f90.preplumed lib/plumed/patches/qespresso-7.0.config lib/plumed/patches/qespresso-7.0.diff/Modules/Makefile lib/plumed/patches/qespresso-7.0.diff/Modules/Makefile.preplumed lib/plumed/patches/qespresso-7.0.diff/PW/src/forces.f90 lib/plumed/patches/qespresso-7.0.diff/PW/src/forces.f90.preplumed lib/plumed/patches/qespresso-7.0.diff/PW/src/plugin_ext_forces.f90 lib/plumed/patches/qespresso-7.0.diff/PW/src/plugin_ext_forces.f90.preplumed lib/plumed/patches/qespresso-7.0.diff/PW/src/plugin_initialization.f90 lib/plumed/patches/qespresso-7.0.diff/PW/src/plugin_initialization.f90.preplumed lib/plumed/patches/qespresso-7.0.diff/PW/src/run_pwscf.f90 lib/plumed/patches/qespresso-7.0.diff/PW/src/run_pwscf.f90.preplumed lib/plumed/patches/qespresso-7.2.config lib/plumed/patches/qespresso-7.2.diff/Modules/Makefile lib/plumed/patches/qespresso-7.2.diff/Modules/Makefile.preplumed lib/plumed/patches/qespresso-7.2.diff/PW/src/forces.f90 lib/plumed/patches/qespresso-7.2.diff/PW/src/forces.f90.preplumed lib/plumed/patches/qespresso-7.2.diff/PW/src/plugin_ext_forces.f90 lib/plumed/patches/qespresso-7.2.diff/PW/src/plugin_ext_forces.f90.preplumed lib/plumed/patches/qespresso-7.2.diff/PW/src/plugin_initialization.f90 lib/plumed/patches/qespresso-7.2.diff/PW/src/plugin_initialization.f90.preplumed lib/plumed/patches/qespresso-7.2.diff/PW/src/run_pwscf.f90 lib/plumed/patches/qespresso-7.2.diff/PW/src/run_pwscf.f90.preplumed lib/plumed/plumed-config lib/plumed/plumed-mklib lib/plumed/plumed-newcv lib/plumed/plumed-partial_tempering lib/plumed/plumed-patch lib/plumed/plumed-runtime lib/plumed/plumed-selector lib/plumed/plumed-vim2html lib/plumed/scripts/config.sh lib/plumed/scripts/mklib.sh lib/plumed/scripts/newcv.sh lib/plumed/scripts/partial_tempering.sh lib/plumed/scripts/patch.sh lib/plumed/scripts/selector.sh lib/plumed/scripts/vim2html.sh lib/plumed/src/colvar/Template.cpp lib/plumed/src/config/compile_options.sh lib/plumed/src/config/config.txt lib/plumed/src/lib/Plumed.cmake lib/plumed/src/lib/Plumed.cmake.runtime lib/plumed/src/lib/Plumed.cmake.shared lib/plumed/src/lib/Plumed.cmake.static lib/plumed/src/lib/Plumed.inc lib/plumed/src/lib/Plumed.inc.runtime lib/plumed/src/lib/Plumed.inc.shared lib/plumed/src/lib/Plumed.inc.static lib/plumed/vim/help/ABMD.txt lib/plumed/vim/help/ACCUMULATE.txt lib/plumed/vim/help/ALPHABETA.txt lib/plumed/vim/help/ALPHARMSD.txt lib/plumed/vim/help/ANGLE.txt lib/plumed/vim/help/ANGLES.txt lib/plumed/vim/help/ANGLE_SCALAR.txt lib/plumed/vim/help/ANGLE_VECTOR.txt lib/plumed/vim/help/ANTIBETARMSD.txt lib/plumed/vim/help/ARGS2VATOM.txt lib/plumed/vim/help/AVERAGE.txt lib/plumed/vim/help/BAIES.txt lib/plumed/vim/help/BESSEL.txt lib/plumed/vim/help/BESSEL_SCALAR.txt lib/plumed/vim/help/BESSEL_VECTOR.txt lib/plumed/vim/help/BETWEEN.txt lib/plumed/vim/help/BETWEEN_MATRIX.txt lib/plumed/vim/help/BETWEEN_VECTOR.txt lib/plumed/vim/help/BIASVALUE.txt lib/plumed/vim/help/CALIBER.txt lib/plumed/vim/help/CELL.txt lib/plumed/vim/help/CENTER.txt lib/plumed/vim/help/CENTER_FAST.txt lib/plumed/vim/help/CHARGE.txt lib/plumed/vim/help/CHARGE_SCALAR.txt lib/plumed/vim/help/CHARGE_VECTOR.txt lib/plumed/vim/help/COLLECT.txt lib/plumed/vim/help/COM.txt lib/plumed/vim/help/COMBINE.txt lib/plumed/vim/help/COMBINE_MATRIX.txt lib/plumed/vim/help/COMBINE_SCALAR.txt lib/plumed/vim/help/COMBINE_VECTOR.txt lib/plumed/vim/help/COMMITTOR.txt lib/plumed/vim/help/CONCATENATE.txt lib/plumed/vim/help/CONSTANT.txt lib/plumed/vim/help/CONTACTMAP.txt lib/plumed/vim/help/CONVERT_TO_FES.txt lib/plumed/vim/help/COORDINATION.txt lib/plumed/vim/help/COORD_ANGLES.txt lib/plumed/vim/help/COVARIANCE_MATRIX.txt lib/plumed/vim/help/CREATE_MASK.txt lib/plumed/vim/help/CS2BACKBONE.txt lib/plumed/vim/help/CUSTOM.txt lib/plumed/vim/help/CUSTOM_GRID.txt lib/plumed/vim/help/CUSTOM_MATRIX.txt lib/plumed/vim/help/CUSTOM_SCALAR.txt lib/plumed/vim/help/CUSTOM_VECTOR.txt lib/plumed/vim/help/DEBUG.txt lib/plumed/vim/help/DETERMINANT.txt lib/plumed/vim/help/DHENERGY.txt lib/plumed/vim/help/DIAGONALIZE.txt lib/plumed/vim/help/DIFFERENCE.txt lib/plumed/vim/help/DIFFERENCE_SCALAR.txt lib/plumed/vim/help/DIFFERENCE_VECTOR.txt lib/plumed/vim/help/DIHCOR.txt lib/plumed/vim/help/DIHEDRAL_CORRELATION.txt lib/plumed/vim/help/DIHEDRAL_CORRELATION_SCALAR.txt lib/plumed/vim/help/DIHEDRAL_CORRELATION_VECTOR.txt lib/plumed/vim/help/DIMER.txt lib/plumed/vim/help/DIPOLE.txt lib/plumed/vim/help/DIPOLE_SCALAR.txt lib/plumed/vim/help/DIPOLE_VECTOR.txt lib/plumed/vim/help/DISPLACEMENT.txt lib/plumed/vim/help/DISSIMILARITIES.txt lib/plumed/vim/help/DISTANCE.txt lib/plumed/vim/help/DISTANCES.txt lib/plumed/vim/help/DISTANCE_SCALAR.txt lib/plumed/vim/help/DISTANCE_VECTOR.txt lib/plumed/vim/help/DOMAIN_DECOMPOSITION.txt lib/plumed/vim/help/DRMSD.txt lib/plumed/vim/help/DUMPATOMS.txt lib/plumed/vim/help/DUMPCUBE.txt lib/plumed/vim/help/DUMPDERIVATIVES.txt lib/plumed/vim/help/DUMPFORCES.txt lib/plumed/vim/help/DUMPGRID.txt lib/plumed/vim/help/DUMPMASSCHARGE.txt lib/plumed/vim/help/DUMPMULTICOLVAR.txt lib/plumed/vim/help/DUMPPDB.txt lib/plumed/vim/help/DUMPPROJECTIONS.txt lib/plumed/vim/help/DUMPVECTOR.txt lib/plumed/vim/help/EEFSOLV.txt lib/plumed/vim/help/EFFECTIVE_ENERGY_DRIFT.txt lib/plumed/vim/help/EMMI.txt lib/plumed/vim/help/ENDPLUMED.txt lib/plumed/vim/help/ENERGY.txt lib/plumed/vim/help/ENSEMBLE.txt lib/plumed/vim/help/ERMSD.txt lib/plumed/vim/help/EUCLIDEAN_DISTANCE.txt lib/plumed/vim/help/EVALUATE_FUNCTION_FROM_GRID.txt lib/plumed/vim/help/EVALUATE_FUNCTION_FROM_GRID_SCALAR.txt lib/plumed/vim/help/EVALUATE_FUNCTION_FROM_GRID_VECTOR.txt lib/plumed/vim/help/EXTENDED_LAGRANGIAN.txt lib/plumed/vim/help/EXTERNAL.txt lib/plumed/vim/help/EXTRACV.txt lib/plumed/vim/help/FAKE.txt lib/plumed/vim/help/FIND_GRID_MAXIMUM.txt lib/plumed/vim/help/FIND_GRID_MINIMUM.txt lib/plumed/vim/help/FIT_TO_TEMPLATE.txt lib/plumed/vim/help/FIXEDATOM.txt lib/plumed/vim/help/FLATTEN.txt lib/plumed/vim/help/FLUSH.txt lib/plumed/vim/help/FRET.txt lib/plumed/vim/help/FUNCPATHGENERAL.txt lib/plumed/vim/help/FUNCPATHMSD.txt lib/plumed/vim/help/FUNCSUMHILLS.txt lib/plumed/vim/help/GATHER_REPLICAS.txt lib/plumed/vim/help/GET.txt lib/plumed/vim/help/GHBFIX.txt lib/plumed/vim/help/GHOST.txt lib/plumed/vim/help/GRADIENT.txt lib/plumed/vim/help/GROUP.txt lib/plumed/vim/help/GYRATION.txt lib/plumed/vim/help/GYRATION_FAST.txt lib/plumed/vim/help/GYRATION_TENSOR.txt lib/plumed/vim/help/HIGHEST.txt lib/plumed/vim/help/HIGHEST_SCALAR.txt lib/plumed/vim/help/HIGHEST_VECTOR.txt lib/plumed/vim/help/HISTOGRAM.txt lib/plumed/vim/help/INCLUDE.txt lib/plumed/vim/help/INPLANEDISTANCES.txt lib/plumed/vim/help/INTEGRATE_GRID.txt lib/plumed/vim/help/INTERPOLATE_GRID.txt lib/plumed/vim/help/INVERT_MATRIX.txt lib/plumed/vim/help/JCOUPLING.txt lib/plumed/vim/help/KDE.txt lib/plumed/vim/help/KERNEL.txt lib/plumed/vim/help/KL_ENTROPY.txt lib/plumed/vim/help/LESS_THAN.txt lib/plumed/vim/help/LESS_THAN_MATRIX.txt lib/plumed/vim/help/LESS_THAN_VECTOR.txt lib/plumed/vim/help/LOAD.txt lib/plumed/vim/help/LOCALENSEMBLE.txt lib/plumed/vim/help/LOWER_WALLS.txt lib/plumed/vim/help/LOWER_WALLS_SCALAR.txt lib/plumed/vim/help/LOWEST.txt lib/plumed/vim/help/LOWEST_SCALAR.txt lib/plumed/vim/help/LOWEST_VECTOR.txt lib/plumed/vim/help/MAHALANOBIS_DISTANCE.txt lib/plumed/vim/help/MASS.txt lib/plumed/vim/help/MASS_SCALAR.txt lib/plumed/vim/help/MASS_VECTOR.txt lib/plumed/vim/help/MATHEVAL.txt lib/plumed/vim/help/MATHEVAL_GRID.txt lib/plumed/vim/help/MATHEVAL_MATRIX.txt lib/plumed/vim/help/MATHEVAL_SCALAR.txt lib/plumed/vim/help/MATHEVAL_VECTOR.txt lib/plumed/vim/help/MATRIX_PRODUCT.txt lib/plumed/vim/help/MATRIX_PRODUCT_DIAGONAL.txt lib/plumed/vim/help/MATRIX_VECTOR_PRODUCT.txt lib/plumed/vim/help/MAXENT.txt lib/plumed/vim/help/MEAN.txt lib/plumed/vim/help/MEAN_SCALAR.txt lib/plumed/vim/help/MEAN_VECTOR.txt lib/plumed/vim/help/METAD.txt lib/plumed/vim/help/METAINFERENCE.txt lib/plumed/vim/help/MFILTER_LESS.txt lib/plumed/vim/help/MFILTER_MORE.txt lib/plumed/vim/help/MOLINFO.txt lib/plumed/vim/help/MOMENTS.txt lib/plumed/vim/help/MOMENTS_SCALAR.txt lib/plumed/vim/help/MOMENTS_VECTOR.txt lib/plumed/vim/help/MORE_THAN.txt lib/plumed/vim/help/MORE_THAN_MATRIX.txt lib/plumed/vim/help/MORE_THAN_VECTOR.txt lib/plumed/vim/help/MOVINGRESTRAINT.txt lib/plumed/vim/help/MULTICOLVARDENS.txt lib/plumed/vim/help/MULTI_RMSD.txt lib/plumed/vim/help/NOE.txt lib/plumed/vim/help/NORMALIZED_EUCLIDEAN_DISTANCE.txt lib/plumed/vim/help/ONES.txt lib/plumed/vim/help/OUTER_PRODUCT.txt lib/plumed/vim/help/PAIRENTROPIES.txt lib/plumed/vim/help/PAIRENTROPY.txt lib/plumed/vim/help/PARABETARMSD.txt lib/plumed/vim/help/PATHMSD.txt lib/plumed/vim/help/PBC.txt lib/plumed/vim/help/PBMETAD.txt lib/plumed/vim/help/PCARMSD.txt lib/plumed/vim/help/PCS.txt lib/plumed/vim/help/PDB2CONSTANT.txt lib/plumed/vim/help/PIECEWISE.txt lib/plumed/vim/help/PIECEWISE_SCALAR.txt lib/plumed/vim/help/PLANE.txt lib/plumed/vim/help/PLANES.txt lib/plumed/vim/help/PLANE_SCALAR.txt lib/plumed/vim/help/PLANE_VECTOR.txt lib/plumed/vim/help/PLUMED.txt lib/plumed/vim/help/POSITION.txt lib/plumed/vim/help/POSITION_SCALAR.txt lib/plumed/vim/help/POSITION_VECTOR.txt lib/plumed/vim/help/PRE.txt lib/plumed/vim/help/PRINT.txt lib/plumed/vim/help/PRINT_NDX.txt lib/plumed/vim/help/PRODUCT.txt lib/plumed/vim/help/PROJECTION_ON_AXIS.txt lib/plumed/vim/help/PROPERTYMAP.txt lib/plumed/vim/help/PUCKERING.txt lib/plumed/vim/help/PUT.txt lib/plumed/vim/help/RANDOM_EXCHANGES.txt lib/plumed/vim/help/RDC.txt lib/plumed/vim/help/RDF.txt lib/plumed/vim/help/READ.txt lib/plumed/vim/help/READMASSCHARGE.txt lib/plumed/vim/help/REFERENCE_GRID.txt lib/plumed/vim/help/RESCALE.txt lib/plumed/vim/help/RESET_CELL.txt lib/plumed/vim/help/RESTART.txt lib/plumed/vim/help/RESTRAINT.txt lib/plumed/vim/help/RESTRAINT_SCALAR.txt lib/plumed/vim/help/REWEIGHT_BIAS.txt lib/plumed/vim/help/REWEIGHT_METAD.txt lib/plumed/vim/help/REWEIGHT_TEMP_PRESS.txt lib/plumed/vim/help/RMSD.txt lib/plumed/vim/help/RMSD_SCALAR.txt lib/plumed/vim/help/RMSD_VECTOR.txt lib/plumed/vim/help/SANS.txt lib/plumed/vim/help/SAXS.txt lib/plumed/vim/help/SECONDARY_STRUCTURE_RMSD.txt lib/plumed/vim/help/SELECT.txt lib/plumed/vim/help/SELECTOR.txt lib/plumed/vim/help/SELECT_COMPONENTS.txt lib/plumed/vim/help/SELECT_WITH_MASK.txt lib/plumed/vim/help/SHADOW.txt lib/plumed/vim/help/SORT.txt lib/plumed/vim/help/SORT_SCALAR.txt lib/plumed/vim/help/SORT_VECTOR.txt lib/plumed/vim/help/SPHERICAL_KDE.txt lib/plumed/vim/help/STATS.txt lib/plumed/vim/help/SUM.txt lib/plumed/vim/help/SUM_GRID.txt lib/plumed/vim/help/SUM_MATRIX.txt lib/plumed/vim/help/SUM_SCALAR.txt lib/plumed/vim/help/SUM_VECTOR.txt lib/plumed/vim/help/TEMPLATE.txt lib/plumed/vim/help/TIME.txt lib/plumed/vim/help/TORSION.txt lib/plumed/vim/help/TORSIONS.txt lib/plumed/vim/help/TORSION_SCALAR.txt lib/plumed/vim/help/TORSION_VECTOR.txt lib/plumed/vim/help/TRANSPOSE.txt lib/plumed/vim/help/UNITS.txt lib/plumed/vim/help/UPDATE_IF.txt lib/plumed/vim/help/UPPER_WALLS.txt lib/plumed/vim/help/UPPER_WALLS_SCALAR.txt lib/plumed/vim/help/UWALLS.txt lib/plumed/vim/help/VOLUME.txt lib/plumed/vim/help/VORONOI.txt lib/plumed/vim/help/VSTACK.txt lib/plumed/vim/help/WHOLEMOLECULES.txt lib/plumed/vim/help/WRAPAROUND.txt lib/plumed/vim/help/XANGLES.txt lib/plumed/vim/help/XDISTANCES.txt lib/plumed/vim/help/XYTORSIONS.txt lib/plumed/vim/help/XZTORSIONS.txt lib/plumed/vim/help/YANGLES.txt lib/plumed/vim/help/YDISTANCES.txt lib/plumed/vim/help/YXTORSIONS.txt lib/plumed/vim/help/YZTORSIONS.txt lib/plumed/vim/help/ZANGLES.txt lib/plumed/vim/help/ZDISTANCES.txt lib/plumed/vim/help/ZXTORSIONS.txt lib/plumed/vim/help/ZYTORSIONS.txt lib/plumed/vim/scripts.vim lib/plumed/vim/syntax/plumed.vim lib/plumed/vim/syntax/plumedf.vim libdata/pkgconfig/plumed.pc libdata/pkgconfig/plumedInternals.pc libdata/pkgconfig/plumedWrapper.pc share/bash-completion/completions/plumed