--- src/plugins_3rdparty/hmm2/src/u_search/uhmmsearch_sse.cpp.orig	2026-03-01 18:44:47 UTC
+++ src/plugins_3rdparty/hmm2/src/u_search/uhmmsearch_sse.cpp
@@ -1,5 +1,9 @@
 #include <assert.h>
+#if defined(__i386__) || defined(__amd64__)
 #include <emmintrin.h>
+#else
+#include <sse2neon.h>
+#endif
 #include <hmmer2/funcs.h>
 
 #include <U2Core/SequenceWalkerTask.h>
--- src/plugins/smith_waterman/src/SmithWatermanAlgorithmSSE2.cpp.orig	2026-03-01 18:44:47 UTC
+++ src/plugins/smith_waterman/src/SmithWatermanAlgorithmSSE2.cpp
@@ -23,7 +23,11 @@ U2_DISABLE_WARNINGS
  * MA 02110-1301, USA.
  */
 
+#if defined(__i386__) || defined(__amd64__)
 #include <emmintrin.h>
+#else
+#include <sse2neon.h>
+#endif
 #include <iostream>
 
 #include "SmithWatermanAlgorithmSSE2.h"
--- src/plugins/smith_waterman/src/SmithWatermanAlgorithmSSE2.h.orig	2026-03-01 18:44:47 UTC
+++ src/plugins/smith_waterman/src/SmithWatermanAlgorithmSSE2.h
@@ -21,7 +21,11 @@
 
 #pragma once
 
+#if defined(__i386__) || defined(__amd64__)
 #include <emmintrin.h>
+#else
+#include <sse2neon.h>
+#endif
 
 #include "SmithWatermanAlgorithm.h"