PORTNAME= samtools DISTVERSION= 1.23.1 CATEGORIES= biology MAINTAINER= jwb@FreeBSD.org COMMENT= Tools for manipulating next-generation sequencing data WWW= https://www.htslib.org/ LICENSE= MIT LICENSE_FILE= ${WRKSRC}/LICENSE BUILD_DEPENDS= htslib>=1.22:biology/htslib LIB_DEPENDS= libhts.so:biology/htslib TEST_DEPENDS= bash:shells/bash USES= autoreconf gmake localbase ncurses perl5 python:env shebangfix USE_GITHUB= yes USE_PERL5= test GNU_CONFIGURE= yes GNU_CONFIGURE_MANPREFIX= ${PREFIX}/share SHEBANG_FILES= misc/*.pl misc/plot-bamstats test/test.pl CONFIGURE_ARGS= --with-htslib=system TEST_TARGET= test .include