--- external/pufferfish/src/PuffAligner.cpp.orig 2023-06-26 19:34:50 UTC +++ external/pufferfish/src/PuffAligner.cpp @@ -1,7 +1,10 @@ #include "nonstd/string_view.hpp" #include "PuffAligner.hpp" #include "Util.hpp" -#include "libdivide/libdivide.h" +// Bundled libdivide causes build failures with clang19 +// Use FreeBSD libdivde port instead +// #include "libdivide/libdivide.h" +#include std::string extractReadSeq(const std::string& readSeq, uint32_t rstart, uint32_t rend, bool isFw) { std::string subseq = readSeq.substr(rstart, rend - rstart);