PORTNAME=	gffutils
DISTVERSION=	0.14
CATEGORIES=	biology python
MASTER_SITES=	PYPI
PKGNAMEPREFIX=	${PYTHON_PKGNAMEPREFIX}

MAINTAINER=	yuri@FreeBSD.org
COMMENT=	Work with GFF and GTF files in a flexible database framework
WWW=		https://github.com/daler/gffutils

LICENSE=	MIT
LICENSE_FILE=	${WRKSRC}/LICENSE

BUILD_DEPENDS=	${PY_SETUPTOOLS} \
		${PYTHON_PKGNAMEPREFIX}wheel>0:devel/py-wheel@${PY_FLAVOR}
RUN_DEPENDS=	${PYTHON_PKGNAMEPREFIX}argcomplete>=1.9.4:devel/py-argcomplete@${PY_FLAVOR} \
		${PYTHON_PKGNAMEPREFIX}argh>=0.26.2:devel/py-argh@${PY_FLAVOR} \
		${PYTHON_PKGNAMEPREFIX}pyfaidx>=0.5.5.2:biology/py-pyfaidx@${PY_FLAVOR} \
		${PYTHON_PKGNAMEPREFIX}simplejson>0:devel/py-simplejson@${PY_FLAVOR} \
		${PYTHON_PKGNAMEPREFIX}six>=1.12.0:devel/py-six@${PY_FLAVOR}

USES=		python shebangfix
USE_PYTHON=	pep517 concurrent autoplist pytest

SHEBANG_FILES=	gffutils/scripts/gffutils-cli

TEST_ENV=	${MAKE_ENV} \
		PATH=${STAGEDIR}${PREFIX}/bin:${PATH} \
		PYTHONPATH=${STAGEDIR}${PYTHONPREFIX_SITELIBDIR}

NO_ARCH=	yes

# tests as of 0.14: 135 passed, 2 skipped, 6 warnings in 4.29s

.include <bsd.port.mk>