bin/preseq
bin/to-mr
include/GenomicRegion.hpp
include/MappedRead.hpp
include/OptionParser.hpp
include/QualityScore.hpp
include/bisulfite_utils.hpp
include/chromosome_utils.hpp
include/cigar_utils.hpp
include/dna_four_bit.hpp
include/htslib_wrapper_deprecated.hpp
include/sam_record.hpp
include/sim_utils.hpp
include/smithlab_os.hpp
include/smithlab_utils.hpp
include/zlib_wrapper.hpp
lib/libsmithlab_cpp.a