--- ./tig_node.c.orig 2007-11-06 23:02:49.000000000 +0100 +++ ./tig_node.c 2014-08-02 12:39:30.000000000 +0200 @@ -138,6 +138,7 @@ tig_node->best_stack_length[0] = tig_node->best_stack_length[1] = 0; } +void alloc_edge(contig, orientation, pair, reverse) Contig *contig; int orientation, reverse; @@ -176,6 +177,7 @@ tig_node->edges[orientation] = edge; } +void find_best_paths(gap_cutoff, LLR_reject_cutoff, LLR_join_cutoff) int gap_cutoff, LLR_reject_cutoff, LLR_join_cutoff; {