PORTNAME= coverm DISTVERSIONPREFIX= v DISTVERSION= 0.8.0 CATEGORIES= biology MAINTAINER= yuri@FreeBSD.org COMMENT= Read coverage calculator for metagenomics WWW= https://github.com/wwood/CoverM LICENSE= AGPLv3 LICENSE_FILE= ${WRKSRC}/LICENCE.txt BROKEN_aarch64= compilation fails, see https://github.com/wwood/CoverM/issues/234 BROKEN_i386= compilation fails, see https://github.com/wwood/CoverM/issues/227 USES= cargo USE_GITHUB= yes GH_ACCOUNT= wwood GH_PROJECT= CoverM CARGO_CRATES= addr2line-0.25.1 \ adler2-2.0.1 \ aho-corasick-1.1.4 \ ansi_term-0.12.1 \ anstream-1.0.0 \ anstyle-1.0.14 \ anstyle-parse-1.0.0 \ anstyle-query-1.1.5 \ anstyle-wincon-3.0.11 \ anyhow-1.0.103 \ approx-0.5.1 \ assert_cli-0.6.3 \ autocfg-1.5.1 \ backtrace-0.3.76 \ bincode-1.3.3 \ bio-2.0.3 \ bio-types-1.0.4 \ bird_tool_utils-0.5.2 \ bird_tool_utils-man-0.4.0 \ bit-set-0.8.0 \ bit-vec-0.8.0 \ bitflags-1.3.2 \ bitflags-2.13.0 \ buffer-redux-1.1.0 \ bv-0.11.1 \ bytecount-0.6.9 \ bytemuck-1.25.0 \ byteorder-1.5.0 \ bzip2-0.4.4 \ bzip2-sys-0.1.13+1.0.8 \ capnp-0.14.11 \ cargo-husky-1.5.0 \ cc-1.2.65 \ cfg-if-1.0.4 \ cfg_aliases-0.2.1 \ checkm-0.3.0 \ clap-4.6.1 \ clap_builder-4.6.0 \ clap_complete-4.6.6 \ clap_lex-1.1.0 \ cmake-0.1.58 \ colorchoice-1.0.5 \ colored-1.9.4 \ concurrent-queue-2.5.0 \ crc32fast-1.5.0 \ crossbeam-deque-0.8.6 \ crossbeam-epoch-0.9.18 \ crossbeam-utils-0.8.21 \ csv-1.4.0 \ csv-core-0.1.13 \ custom_derive-0.1.7 \ defmt-1.1.0 \ defmt-macros-1.1.0 \ defmt-parser-1.0.0 \ derive-new-0.5.9 \ derive-new-0.6.0 \ difference-2.0.0 \ disjoint-0.8.0 \ displaydoc-0.2.6 \ editdistancek-1.0.2 \ either-1.16.0 \ enum-map-2.7.3 \ enum-map-derive-0.17.0 \ env_filter-2.0.0 \ env_logger-0.10.2 \ env_logger-0.11.11 \ environment-0.1.1 \ equivalent-1.0.2 \ errno-0.3.14 \ failure-0.1.8 \ failure_derive-0.1.8 \ fastrand-2.4.1 \ feature-probe-0.1.1 \ finch-0.6.2 \ find-msvc-tools-0.1.9 \ fixedbitset-0.4.2 \ flate2-1.1.9 \ form_urlencoded-1.2.2 \ fs-utils-1.1.4 \ fuchsia-cprng-0.1.1 \ fxhash-0.2.1 \ galah-0.5.2 \ getrandom-0.2.17 \ getrandom-0.3.4 \ getrandom-0.4.3 \ gimli-0.32.3 \ glob-0.3.3 \ hashbrown-0.17.1 \ heck-0.5.0 \ hermit-abi-0.5.2 \ home-0.5.12 \ hts-sys-2.2.0 \ humantime-2.3.0 \ icu_collections-2.2.0 \ icu_locale_core-2.2.0 \ icu_normalizer-2.2.0 \ icu_normalizer_data-2.2.0 \ icu_properties-2.2.0 \ icu_properties_data-2.2.0 \ icu_provider-2.2.0 \ idna-1.1.0 \ idna_adapter-1.2.2 \ ieee754-0.2.6 \ indexmap-2.14.0 \ is-terminal-0.4.17 \ is_terminal_polyfill-1.70.2 \ itertools-0.13.0 \ itertools-num-0.1.3 \ itoa-1.0.18 \ jiff-0.2.31 \ jiff-static-0.2.31 \ jobserver-0.1.34 \ lazy_static-1.5.0 \ libc-0.2.186 \ libm-0.2.16 \ libz-sys-1.1.29 \ linear-map-1.2.0 \ linux-raw-sys-0.4.15 \ linux-raw-sys-0.12.1 \ litemap-0.8.2 \ log-0.4.33 \ lzma-sys-0.1.20 \ matrixmultiply-0.3.10 \ memchr-2.8.2 \ memmap-0.7.0 \ miniz_oxide-0.8.9 \ multimap-0.10.1 \ murmurhash3-0.0.5 \ nalgebra-0.32.6 \ nalgebra-macros-0.2.2 \ ndarray-0.16.1 \ needletail-0.5.1 \ newtype_derive-0.1.6 \ nix-0.29.0 \ num-complex-0.4.6 \ num-integer-0.1.46 \ num-rational-0.4.2 \ num-traits-0.2.19 \ object-0.37.3 \ once_cell-1.21.4 \ once_cell_polyfill-1.70.2 \ ordered-float-4.6.0 \ paste-1.0.15 \ percent-encoding-2.3.2 \ petgraph-0.6.5 \ pkg-config-0.3.33 \ portable-atomic-1.13.1 \ portable-atomic-util-0.2.7 \ potential_utf-0.1.5 \ ppv-lite86-0.2.21 \ proc-macro-error-attr2-2.0.0 \ proc-macro-error2-2.0.1 \ proc-macro2-1.0.106 \ quick-error-1.2.3 \ quote-1.0.46 \ r-efi-5.3.0 \ r-efi-6.0.0 \ rand-0.4.6 \ rand-0.8.6 \ rand_chacha-0.3.1 \ rand_core-0.3.1 \ rand_core-0.4.2 \ rand_core-0.6.4 \ rand_distr-0.4.3 \ rawpointer-0.2.1 \ rayon-1.12.0 \ rayon-core-1.13.0 \ rdrand-0.4.0 \ regex-1.12.4 \ regex-automata-0.4.14 \ regex-syntax-0.8.11 \ remove_dir_all-0.5.3 \ roff-0.1.0 \ roff-0.2.2 \ rust-htslib-0.46.0 \ rustc-demangle-0.1.27 \ rustc_version-0.1.7 \ rustix-0.38.44 \ rustix-1.1.4 \ rustversion-1.0.22 \ ryu-1.0.23 \ safe_arch-0.7.4 \ semver-0.1.20 \ serde-1.0.228 \ serde_core-1.0.228 \ serde_derive-1.0.228 \ serde_json-1.0.150 \ shlex-2.0.1 \ simba-0.8.1 \ simd-adler32-0.3.9 \ smallvec-1.15.2 \ stable_deref_trait-1.2.1 \ statrs-0.17.1 \ strsim-0.11.1 \ strum-0.26.3 \ strum_macros-0.26.4 \ syn-1.0.109 \ syn-2.0.118 \ synstructure-0.12.6 \ synstructure-0.13.2 \ tempdir-0.3.7 \ tempfile-3.27.0 \ termcolor-1.4.1 \ thiserror-1.0.69 \ thiserror-2.0.18 \ thiserror-impl-1.0.69 \ thiserror-impl-2.0.18 \ tinystr-0.8.3 \ triple_accel-0.4.0 \ typenum-1.20.1 \ unicode-ident-1.0.24 \ unicode-xid-0.2.6 \ url-2.5.8 \ utf8_iter-1.0.4 \ utf8parse-0.2.2 \ vcpkg-0.2.15 \ vec_map-0.8.2 \ version-compare-0.2.1 \ wasi-0.11.1+wasi-snapshot-preview1 \ wasip2-1.0.4+wasi-0.2.12 \ which-6.0.3 \ wide-0.7.33 \ winapi-0.3.9 \ winapi-i686-pc-windows-gnu-0.4.0 \ winapi-util-0.1.11 \ winapi-x86_64-pc-windows-gnu-0.4.0 \ windows-link-0.2.1 \ windows-sys-0.59.0 \ windows-sys-0.61.2 \ windows-targets-0.52.6 \ windows_aarch64_gnullvm-0.52.6 \ windows_aarch64_msvc-0.52.6 \ windows_i686_gnu-0.52.6 \ windows_i686_gnullvm-0.52.6 \ windows_i686_msvc-0.52.6 \ windows_x86_64_gnu-0.52.6 \ windows_x86_64_gnullvm-0.52.6 \ windows_x86_64_msvc-0.52.6 \ winsafe-0.0.19 \ wit-bindgen-0.57.1 \ writeable-0.6.3 \ xz2-0.1.7 \ yoke-0.8.3 \ yoke-derive-0.8.2 \ zerocopy-0.8.52 \ zerocopy-derive-0.8.52 \ zerofrom-0.1.8 \ zerofrom-derive-0.1.7 \ zerotrie-0.2.4 \ zerovec-0.11.6 \ zerovec-derive-0.11.3 \ zmij-1.0.21 PLIST_FILES= bin/${PORTNAME} post-install: @${STRIP_CMD} ${STAGEDIR}${PREFIX}/bin/${PORTNAME} .include