PORTNAME=	CheckM
DISTVERSIONPREFIX=	v
DISTVERSION=	1.2.3
CATEGORIES=	biology python

MAINTAINER=	yuri@FreeBSD.org
COMMENT=	Quality assessment tool for the microbial genomes
WWW=		https://ecogenomics.github.io/CheckM/

LICENSE=	GPLv3
LICENSE_FILE=	${WRKSRC}/LICENSE

RUN_DEPENDS=	${PYNUMPY} \
		${PYTHON_PKGNAMEPREFIX}DendroPy>0:science/py-DendroPy@${PY_FLAVOR} \
		${PYTHON_PKGNAMEPREFIX}matplotlib>0:math/py-matplotlib@${PY_FLAVOR} \
		${PYTHON_PKGNAMEPREFIX}pysam>0:biology/py-pysam@${PY_FLAVOR} \
		${PYTHON_PKGNAMEPREFIX}scipy>0:science/py-scipy@${PY_FLAVOR}

USES=		dos2unix python
USE_GITHUB=	yes
GH_ACCOUNT=	Ecogenomics
USE_PYTHON=	distutils noflavors autoplist

NO_ARCH=	yes

.include <bsd.port.mk>