--- configure.orig 2023-11-21 22:33:29 UTC +++ configure @@ -5513,7 +5513,7 @@ _ACEOF /* end confdefs.h. */ $ac_c_conftest_c99_program _ACEOF -for ac_arg in '' -std=gnu99 -std=c99 -c99 -qlanglvl=extc1x -qlanglvl=extc99 -AC99 -D_STDC_C99= +for ac_arg in '' -std=gnu99 -qlanglvl=extc1x -qlanglvl=extc99 do CC="$ac_save_CC $ac_arg" if ac_fn_c_try_compile "$LINENO" @@ -6659,7 +6659,7 @@ _ACEOF /* end confdefs.h. */ $ac_c_conftest_c99_program _ACEOF -for ac_arg in '' -std=gnu99 -std=c99 -c99 -qlanglvl=extc1x -qlanglvl=extc99 -AC99 -D_STDC_C99= +for ac_arg in '' -std=gnu99 -qlanglvl=extc1x -qlanglvl=extc99 do CC="$ac_save_CC $ac_arg" if ac_fn_c_try_compile "$LINENO" @@ -7270,7 +7270,7 @@ _ACEOF /* end confdefs.h. */ $ac_cxx_conftest_cxx98_program _ACEOF -for ac_arg in '' -std=gnu++98 -std=c++98 -qlanglvl=extended -AA +for ac_arg in '' -std=gnu++98 -qlanglvl=extended -AA do CXX="$ac_save_CXX $ac_arg" if ac_fn_cxx_try_compile "$LINENO" @@ -12320,7 +12320,7 @@ printf %s "checking whether the $compiler linker ($LD) hardcode_minus_L=no hardcode_shlibpath_var=unsupported inherit_rpath=no - link_all_deplibs=unknown + link_all_deplibs=no module_cmds= module_expsym_cmds= old_archive_from_new_cmds= @@ -12622,7 +12622,7 @@ _LT_EOF wlarc= else archive_cmds='$CC -shared $pic_flag $libobjs $deplibs $compiler_flags $wl-soname $wl$soname -o $lib' - archive_expsym_cmds='$CC -shared $pic_flag $libobjs $deplibs $compiler_flags $wl-soname $wl$soname $wl-retain-symbols-file $wl$export_symbols -o $lib' + archive_expsym_cmds='echo "{ global:" > $lib-ver~ sed -e "s|$|;|" < $export_symbols >> $lib-ver~ echo "local: *; };" >> $lib-ver~$CC -shared $pic_flag $libobjs $deplibs $compiler_flags $wl-soname $wl$soname $wl-version-script $wl$lib-ver -o $lib' fi ;; @@ -12641,7 +12641,7 @@ _LT_EOF _LT_EOF elif $LD --help 2>&1 | $GREP ': supported targets:.* elf' > /dev/null; then archive_cmds='$CC -shared $pic_flag $libobjs $deplibs $compiler_flags $wl-soname $wl$soname -o $lib' - archive_expsym_cmds='$CC -shared $pic_flag $libobjs $deplibs $compiler_flags $wl-soname $wl$soname $wl-retain-symbols-file $wl$export_symbols -o $lib' + archive_expsym_cmds='echo "{ global:" > $lib-ver~ sed -e "s|$|;|" < $export_symbols >> $lib-ver~ echo "local: *; };" >> $lib-ver~$CC -shared $pic_flag $libobjs $deplibs $compiler_flags $wl-soname $wl$soname $wl-version-script $wl$lib-ver -o $lib' else ld_shlibs=no fi @@ -12670,7 +12670,7 @@ _LT_EOF if $LD --help 2>&1 | $GREP ': supported targets:.* elf' > /dev/null; then hardcode_libdir_flag_spec='$wl-rpath $wl$libdir' archive_cmds='$CC -shared $libobjs $deplibs $compiler_flags $wl-soname $wl$soname -o $lib' - archive_expsym_cmds='$CC -shared $libobjs $deplibs $compiler_flags $wl-soname $wl$soname $wl-retain-symbols-file $wl$export_symbols -o $lib' + archive_expsym_cmds='echo "{ global:" > $lib-ver~ sed -e "s|$|;|" < $export_symbols >> $lib-ver~ echo "local: *; };" >> $lib-ver~$CC -shared $libobjs $deplibs $compiler_flags $wl-soname $wl$soname $wl-version-script $wl$lib-ver -o $lib' else ld_shlibs=no fi @@ -12688,7 +12688,7 @@ _LT_EOF *) if $LD --help 2>&1 | $GREP ': supported targets:.* elf' > /dev/null; then archive_cmds='$CC -shared $pic_flag $libobjs $deplibs $compiler_flags $wl-soname $wl$soname -o $lib' - archive_expsym_cmds='$CC -shared $pic_flag $libobjs $deplibs $compiler_flags $wl-soname $wl$soname $wl-retain-symbols-file $wl$export_symbols -o $lib' + archive_expsym_cmds='echo "{ global:" > $lib-ver~ sed -e "s|$|;|" < $export_symbols >> $lib-ver~ echo "local: *; };" >> $lib-ver~$CC -shared $pic_flag $libobjs $deplibs $compiler_flags $wl-soname $wl$soname $wl-version-script $wl$lib-ver -o $lib' else ld_shlibs=no fi @@ -13344,7 +13344,7 @@ printf "%s\n" "$lt_cv_irix_exported_symbol" >&6; } hardcode_direct_absolute=yes if test -z "`echo __ELF__ | $CC -E - | $GREP __ELF__`"; then archive_cmds='$CC -shared $pic_flag -o $lib $libobjs $deplibs $compiler_flags' - archive_expsym_cmds='$CC -shared $pic_flag -o $lib $libobjs $deplibs $compiler_flags $wl-retain-symbols-file,$export_symbols' + archive_expsym_cmds='echo "{ global:" > $lib-ver~ sed -e "s|$|;|" < $export_symbols >> $lib-ver~ echo "local: *; };" >> $lib-ver~$CC -shared $pic_flag -o $lib $libobjs $deplibs $compiler_flags $wl-version-script,$lib-ver' hardcode_libdir_flag_spec='$wl-rpath,$libdir' export_dynamic_flag_spec='$wl-E' else @@ -14194,7 +14194,7 @@ freebsd* | dragonfly*) version_type=freebsd-$objformat case $version_type in freebsd-elf*) - library_names_spec='$libname$release$shared_ext$versuffix $libname$release$shared_ext$major $libname$shared_ext' + library_names_spec='$libname$release$shared_ext$versuffix $libname$release$shared_ext$major $libname$shared_ext' soname_spec='$libname$release$shared_ext$major' soname_spec='$libname$release$shared_ext$major' need_version=no need_lib_prefix=no @@ -15345,7 +15345,7 @@ printf %s "checking whether stripping libraries is pos old_striplib= { printf "%s\n" "$as_me:${as_lineno-$LINENO}: checking whether stripping libraries is possible" >&5 printf %s "checking whether stripping libraries is possible... " >&6; } -if test -n "$STRIP" && $STRIP -V 2>&1 | $GREP "GNU strip" >/dev/null; then +if test -n "$STRIP" && $STRIP -V 2>&1 | $GREP "strip" >/dev/null; then test -z "$old_striplib" && old_striplib="$STRIP --strip-debug" test -z "$striplib" && striplib="$STRIP --strip-unneeded" { printf "%s\n" "$as_me:${as_lineno-$LINENO}: result: yes" >&5 @@ -15592,7 +15592,7 @@ module_expsym_cmds_CXX= inherit_rpath_CXX=no module_cmds_CXX= module_expsym_cmds_CXX= -link_all_deplibs_CXX=unknown +link_all_deplibs_CXX=no old_archive_cmds_CXX=$old_archive_cmds reload_flag_CXX=$reload_flag reload_cmds_CXX=$reload_cmds @@ -15806,7 +15806,7 @@ with_gnu_ld=$lt_cv_prog_gnu_ld # archiving commands below assume that GNU ld is being used. if test yes = "$with_gnu_ld"; then archive_cmds_CXX='$CC $pic_flag -shared -nostdlib $predep_objects $libobjs $deplibs $postdep_objects $compiler_flags $wl-soname $wl$soname -o $lib' - archive_expsym_cmds_CXX='$CC $pic_flag -shared -nostdlib $predep_objects $libobjs $deplibs $postdep_objects $compiler_flags $wl-soname $wl$soname $wl-retain-symbols-file $wl$export_symbols -o $lib' + archive_expsym_cmds_CXX='echo "{ global:" > $lib-ver~ sed -e "s|$|;|" < $export_symbols >> $lib-ver~ echo "local: *; };" >> $lib-ver~$CC $pic_flag -shared -nostdlib $predep_objects $libobjs $deplibs $postdep_objects $compiler_flags $wl-soname $wl$soname $wl-version-script $wl$lib-ver -o $lib' hardcode_libdir_flag_spec_CXX='$wl-rpath $wl$libdir' export_dynamic_flag_spec_CXX='$wl--export-dynamic' @@ -16502,7 +16502,7 @@ fi case `$CC -V 2>&1` in *"Version 7."*) archive_cmds_CXX='$CC -shared $predep_objects $libobjs $deplibs $postdep_objects $compiler_flags $wl-soname $wl$soname -o $lib' - archive_expsym_cmds_CXX='$CC -shared $predep_objects $libobjs $deplibs $postdep_objects $compiler_flags $wl-soname $wl$soname $wl-retain-symbols-file $wl$export_symbols -o $lib' + archive_expsym_cmds_CXX='echo "{ global:" > $lib-ver~ sed -e "s|$|;|" < $export_symbols >> $lib-ver~ echo "local: *; };" >> $lib-ver~$CC -shared $predep_objects $libobjs $deplibs $postdep_objects $compiler_flags $wl-soname $wl$soname $wl-version-script $wl$lib-ver -o $lib' ;; *) # Version 8.0 or newer tmp_idyn= @@ -16510,7 +16510,7 @@ fi ia64*) tmp_idyn=' -i_dynamic';; esac archive_cmds_CXX='$CC -shared'"$tmp_idyn"' $libobjs $deplibs $compiler_flags $wl-soname $wl$soname -o $lib' - archive_expsym_cmds_CXX='$CC -shared'"$tmp_idyn"' $libobjs $deplibs $compiler_flags $wl-soname $wl$soname $wl-retain-symbols-file $wl$export_symbols -o $lib' + archive_expsym_cmds_CXX='echo "{ global:" > $lib-ver~ sed -e "s|$|;|" < $export_symbols >> $lib-ver~ echo "local: *; };" >> $lib-ver~$CC -shared'"$tmp_idyn"' $libobjs $deplibs $compiler_flags $wl-soname $wl$soname $wl-version-script $wl$lib-ver -o $lib' ;; esac archive_cmds_need_lc_CXX=no @@ -16542,7 +16542,7 @@ fi ;; *) # Version 6 and above use weak symbols archive_cmds_CXX='$CC -shared $pic_flag $predep_objects $libobjs $deplibs $postdep_objects $compiler_flags $wl-soname $wl$soname -o $lib' - archive_expsym_cmds_CXX='$CC -shared $pic_flag $predep_objects $libobjs $deplibs $postdep_objects $compiler_flags $wl-soname $wl$soname $wl-retain-symbols-file $wl$export_symbols -o $lib' + archive_expsym_cmds_CXX='echo "{ global:" > $lib-ver~ sed -e "s|$|;|" < $export_symbols >> $lib-ver~ echo "local: *; };" >> $lib-ver~$CC -shared $pic_flag $predep_objects $libobjs $deplibs $postdep_objects $compiler_flags $wl-soname $wl$soname $wl-version-script $wl$lib-ver -o $lib' ;; esac @@ -16553,7 +16553,7 @@ fi cxx*) # Compaq C++ archive_cmds_CXX='$CC -shared $predep_objects $libobjs $deplibs $postdep_objects $compiler_flags $wl-soname $wl$soname -o $lib' - archive_expsym_cmds_CXX='$CC -shared $predep_objects $libobjs $deplibs $postdep_objects $compiler_flags $wl-soname $wl$soname -o $lib $wl-retain-symbols-file $wl$export_symbols' + archive_expsym_cmds_CXX='echo "{ global:" > $lib-ver~ sed -e "s|$|;|" < $export_symbols >> $lib-ver~ echo "local: *; };" >> $lib-ver~$CC -shared $predep_objects $libobjs $deplibs $postdep_objects $compiler_flags $wl-soname $wl$soname -o $lib $wl-version-script $wl$lib-ver' runpath_var=LD_RUN_PATH hardcode_libdir_flag_spec_CXX='-rpath $libdir' @@ -16587,7 +16587,7 @@ fi # Sun C++ 5.9 no_undefined_flag_CXX=' -zdefs' archive_cmds_CXX='$CC -G$allow_undefined_flag -h$soname -o $lib $predep_objects $libobjs $deplibs $postdep_objects $compiler_flags' - archive_expsym_cmds_CXX='$CC -G$allow_undefined_flag -h$soname -o $lib $predep_objects $libobjs $deplibs $postdep_objects $compiler_flags $wl-retain-symbols-file $wl$export_symbols' + archive_expsym_cmds_CXX='echo "{ global:" > $lib-ver~ sed -e "s|$|;|" < $export_symbols >> $lib-ver~ echo "local: *; };" >> $lib-ver~$CC -G$allow_undefined_flag -h$soname -o $lib $predep_objects $libobjs $deplibs $postdep_objects $compiler_flags $wl-version-script $wl$lib-ver' hardcode_libdir_flag_spec_CXX='-R$libdir' whole_archive_flag_spec_CXX='$wl--whole-archive`new_convenience=; for conv in $convenience\"\"; do test -z \"$conv\" || new_convenience=\"$new_convenience,$conv\"; done; func_echo_all \"$new_convenience\"` $wl--no-whole-archive' compiler_needs_object_CXX=yes @@ -16655,7 +16655,7 @@ fi archive_cmds_CXX='$CC -shared $pic_flag $predep_objects $libobjs $deplibs $postdep_objects $compiler_flags -o $lib' hardcode_libdir_flag_spec_CXX='$wl-rpath,$libdir' if test -z "`echo __ELF__ | $CC -E - | grep __ELF__`"; then - archive_expsym_cmds_CXX='$CC -shared $pic_flag $predep_objects $libobjs $deplibs $postdep_objects $compiler_flags $wl-retain-symbols-file,$export_symbols -o $lib' + archive_expsym_cmds_CXX='echo "{ global:" > $lib-ver~ sed -e "s|$|;|" < $export_symbols >> $lib-ver~ echo "local: *; };" >> $lib-ver~$CC -shared $pic_flag $predep_objects $libobjs $deplibs $postdep_objects $compiler_flags $wl-version-script,$lib-ver -o $lib' export_dynamic_flag_spec_CXX='$wl-E' whole_archive_flag_spec_CXX=$wlarc'--whole-archive$convenience '$wlarc'--no-whole-archive' fi @@ -18186,7 +18186,7 @@ freebsd* | dragonfly*) version_type=freebsd-$objformat case $version_type in freebsd-elf*) - library_names_spec='$libname$release$shared_ext$versuffix $libname$release$shared_ext$major $libname$shared_ext' + library_names_spec='$libname$release$shared_ext$versuffix $libname$release$shared_ext$major $libname$shared_ext' soname_spec='$libname$release$shared_ext$major' soname_spec='$libname$release$shared_ext$major' need_version=no need_lib_prefix=no @@ -21930,7 +21930,7 @@ case $host_os in case $host_os in - freebsd*) +dragonfly* | freebsd*) # -kthread: FreeBSD kernel threads (preferred to -pthread since SMP-able) # lthread: LinuxThreads port on FreeBSD (also preferred to -pthread) @@ -22897,24 +22897,19 @@ HDF5 support is being disabled (equivalent to --with-h with_hdf5="no" with_hdf5_fortran="no" else - HDF5_SHOW=$(eval $H5CC -show) + HDF5_SHOW=`$PKG_CONFIG --cflags hdf5 --libs hdf5` - HDF5_CC=$(eval $H5CC -show | head -n 1 | $AWK '{print $1}') - if test "$HDF5_CC" = "ccache"; then - HDF5_CC=$(eval $H5CC -show | head -n 1 | $AWK '{print $2}') - fi + HDF5_CC=$CC - HDF5_VERSION=$(eval $H5CC -showconfig | $GREP 'HDF5 Version:' \ - | $AWK '{print $3}') + HDF5_VERSION=`$GREP 'HDF5 Version:' /usr/local/lib/libhdf5.settings \ + | $AWK '{print $3}'` - HDF5_tmp_flags=$(eval $H5CC -showconfig \ - | $GREP 'FLAGS\|Extra libraries:' \ - | $AWK -F: '{printf("%s "), $2}' ) + HDF5_tmp_flags=`$GREP 'FLAGS\|Extra libraries:' /usr/local/lib/libhdf5.settings \ + | $AWK -F: '{printf("%s "), $2}'` - HDF5_tmp_inst=$(eval $H5CC -showconfig \ - | $GREP 'Installation point:' \ - | $AWK '{print $NF}' ) + HDF5_tmp_inst=`$GREP 'Installation point:' /usr/local/lib/libhdf5.settings \ + | $AWK '{print $NF}'` HDF5_CPPFLAGS="-I${HDF5_tmp_inst}/include" @@ -23062,7 +23057,7 @@ printf "%s\n" "$H5FC" >&6; } with_hdf5_fortran="yes" - for arg in `$H5FC -show` + for arg in `$PKG_CONFIG --cflags hdf5_fortran --libs hdf5_fortran` do case "$arg" in #( -I*) echo $HDF5_FFLAGS | $GREP -e "$arg" >/dev/null \ @@ -23172,7 +23167,7 @@ fi if test "$ax_compare_version" = "true" ; then -printf "%s\n" "#define H5_NO_DEPRECATED_SYMBOLS 1" >>confdefs.h +# Remove on FreeBSD ports because we use 1.12 with 1.10 API else printf "%s\n" "#define H5_USE_18_API 1" >>confdefs.h