bin/AnalyseDists
bin/AnalyseSeqs
bin/Kinfold
bin/RNA2Dfold
bin/RNALalifold
bin/RNALfold
bin/RNAPKplex
bin/RNAaliduplex
bin/RNAalifold
bin/RNAcofold
bin/RNAdistance
bin/RNAdos
bin/RNAduplex
bin/RNAeval
bin/RNAfold
bin/RNAforester
bin/RNAheat
bin/RNAinverse
bin/RNAlocmin
bin/RNAmultifold
bin/RNApaln
bin/RNAparconv
bin/RNApdist
bin/RNAplex
bin/RNAplfold
bin/RNAplot
bin/RNApvmin
bin/RNAsnoop
bin/RNAsubopt
bin/RNAup
bin/RNAxplorer
bin/b2ct
bin/ct2db
bin/kinwalker
bin/popt
include/ViennaRNA/2Dfold.h
include/ViennaRNA/2Dpfold.h
include/ViennaRNA/LPfold.h
include/ViennaRNA/Lfold.h
include/ViennaRNA/MEA.h
include/ViennaRNA/PKplex.h
include/ViennaRNA/PS_dot.h
include/ViennaRNA/ProfileAln.h
include/ViennaRNA/RNAstruct.h
include/ViennaRNA/ali_plex.h
include/ViennaRNA/alifold.h
include/ViennaRNA/aln_util.h
include/ViennaRNA/alphabet.h
include/ViennaRNA/boltzmann_sampling.h
include/ViennaRNA/centroid.h
include/ViennaRNA/char_stream.h
include/ViennaRNA/cofold.h
include/ViennaRNA/combinatorics.h
include/ViennaRNA/commands.h
include/ViennaRNA/concentrations.h
include/ViennaRNA/constraints.h
include/ViennaRNA/constraints/SHAPE.h
include/ViennaRNA/constraints/basic.h
include/ViennaRNA/constraints/hard.h
include/ViennaRNA/constraints/ligand.h
include/ViennaRNA/constraints/soft.h
include/ViennaRNA/constraints/soft_special.h
include/ViennaRNA/constraints_SHAPE.h
include/ViennaRNA/constraints_hard.h
include/ViennaRNA/constraints_ligand.h
include/ViennaRNA/constraints_soft.h
include/ViennaRNA/convert_epars.h
include/ViennaRNA/data_structures.h
include/ViennaRNA/datastructures/array.h
include/ViennaRNA/datastructures/basic.h
include/ViennaRNA/datastructures/char_stream.h
include/ViennaRNA/datastructures/hash_tables.h
include/ViennaRNA/datastructures/heap.h
include/ViennaRNA/datastructures/lists.h
include/ViennaRNA/datastructures/stream_output.h
include/ViennaRNA/datastructures/string.h
include/ViennaRNA/dist_vars.h
include/ViennaRNA/dp_matrices.h
include/ViennaRNA/duplex.h
include/ViennaRNA/edit_cost.h
include/ViennaRNA/energy_const.h
include/ViennaRNA/energy_par.h
include/ViennaRNA/equilibrium_probs.h
include/ViennaRNA/eval.h
include/ViennaRNA/exterior_loops.h
include/ViennaRNA/file_formats.h
include/ViennaRNA/file_formats_msa.h
include/ViennaRNA/file_utils.h
include/ViennaRNA/findpath.h
include/ViennaRNA/fold.h
include/ViennaRNA/fold_compound.h
include/ViennaRNA/fold_vars.h
include/ViennaRNA/gquad.h
include/ViennaRNA/grammar.h
include/ViennaRNA/hairpin_loops.h
include/ViennaRNA/heat_capacity.h
include/ViennaRNA/interior_loops.h
include/ViennaRNA/inverse.h
include/ViennaRNA/io/file_formats.h
include/ViennaRNA/io/file_formats_msa.h
include/ViennaRNA/io/utils.h
include/ViennaRNA/json.h
include/ViennaRNA/landscape/findpath.h
include/ViennaRNA/landscape/move.h
include/ViennaRNA/landscape/neighbor.h
include/ViennaRNA/landscape/paths.h
include/ViennaRNA/landscape/walk.h
include/ViennaRNA/loop_energies.h
include/ViennaRNA/loops/all.h
include/ViennaRNA/loops/external.h
include/ViennaRNA/loops/hairpin.h
include/ViennaRNA/loops/internal.h
include/ViennaRNA/loops/multibranch.h
include/ViennaRNA/mconf.h
include/ViennaRNA/mfe.h
include/ViennaRNA/mfe_window.h
include/ViennaRNA/mm.h
include/ViennaRNA/model.h
include/ViennaRNA/move_set.h
include/ViennaRNA/multibranch_loops.h
include/ViennaRNA/naview.h
include/ViennaRNA/neighbor.h
include/ViennaRNA/pair_mat.h
include/ViennaRNA/params.h
include/ViennaRNA/params/basic.h
include/ViennaRNA/params/constants.h
include/ViennaRNA/params/convert.h
include/ViennaRNA/params/default.h
include/ViennaRNA/params/io.h
include/ViennaRNA/params/salt.h
include/ViennaRNA/part_func.h
include/ViennaRNA/part_func_co.h
include/ViennaRNA/part_func_up.h
include/ViennaRNA/part_func_window.h
include/ViennaRNA/perturbation_fold.h
include/ViennaRNA/pf_multifold.h
include/ViennaRNA/pk_plex.h
include/ViennaRNA/plex.h
include/ViennaRNA/plot_aln.h
include/ViennaRNA/plot_layouts.h
include/ViennaRNA/plot_structure.h
include/ViennaRNA/plot_utils.h
include/ViennaRNA/plotting/RNApuzzler/RNApuzzler.h
include/ViennaRNA/plotting/RNApuzzler/RNAturtle.h
include/ViennaRNA/plotting/alignments.h
include/ViennaRNA/plotting/layouts.h
include/ViennaRNA/plotting/naview/naview.h
include/ViennaRNA/plotting/probabilities.h
include/ViennaRNA/plotting/structures.h
include/ViennaRNA/plotting/utils.h
include/ViennaRNA/profiledist.h
include/ViennaRNA/read_epars.h
include/ViennaRNA/ribo.h
include/ViennaRNA/search/BoyerMoore.h
include/ViennaRNA/sequence.h
include/ViennaRNA/snofold.h
include/ViennaRNA/snoop.h
include/ViennaRNA/stream_output.h
include/ViennaRNA/string_utils.h
include/ViennaRNA/stringdist.h
include/ViennaRNA/structure_utils.h
include/ViennaRNA/structured_domains.h
include/ViennaRNA/subopt.h
include/ViennaRNA/subopt_zuker.h
include/ViennaRNA/svm.h
include/ViennaRNA/svm_utils.h
include/ViennaRNA/treedist.h
include/ViennaRNA/units.h
include/ViennaRNA/unstructured_domains.h
include/ViennaRNA/utils.h
include/ViennaRNA/utils/alignments.h
include/ViennaRNA/utils/basic.h
include/ViennaRNA/utils/cpu.h
include/ViennaRNA/utils/higher_order_functions.h
include/ViennaRNA/utils/strings.h
include/ViennaRNA/utils/structures.h
include/ViennaRNA/utils/svm.h
include/ViennaRNA/utils/units.h
include/ViennaRNA/vrna_config.h
include/ViennaRNA/walk.h
include/ViennaRNA/wrap_dlib.h
include/ViennaRNA/zscore.h
include/g2.h
include/g2_FIG.h
include/g2_PS.h
include/g2_X11.h
include/g2_gd.h
lib/libRNA.a
lib/libg2.a
libdata/pkgconfig/RNAlib2.pc
share/man/man1/AnalyseDists.1.gz
share/man/man1/AnalyseSeqs.1.gz
share/man/man1/Kinfold.1.gz
share/man/man1/RNA2Dfold.1.gz
share/man/man1/RNALalifold.1.gz
share/man/man1/RNALfold.1.gz
share/man/man1/RNAPKplex.1.gz
share/man/man1/RNAaliduplex.1.gz
share/man/man1/RNAalifold.1.gz
share/man/man1/RNAcofold.1.gz
share/man/man1/RNAdistance.1.gz
share/man/man1/RNAdos.1.gz
share/man/man1/RNAduplex.1.gz
share/man/man1/RNAeval.1.gz
share/man/man1/RNAfold.1.gz
share/man/man1/RNAforester.1.gz
share/man/man1/RNAheat.1.gz
share/man/man1/RNAinverse.1.gz
share/man/man1/RNAlocmin.1.gz
share/man/man1/RNAmultifold.1.gz
share/man/man1/RNApaln.1.gz
share/man/man1/RNAparconv.1.gz
share/man/man1/RNApdist.1.gz
share/man/man1/RNAplex.1.gz
share/man/man1/RNAplfold.1.gz
share/man/man1/RNAplot.1.gz
share/man/man1/RNApvmin.1.gz
share/man/man1/RNAsnoop.1.gz
share/man/man1/RNAsubopt.1.gz
share/man/man1/RNAup.1.gz
share/man/man1/RNAxplorer.1.gz
share/man/man1/ct2db.1.gz
share/man/man1/kinwalker.1.gz
share/ViennaRNA/2Dlandscape.R
share/ViennaRNA/2Dlandscape_mfe.gri
share/ViennaRNA/2Dlandscape_pf.gri
share/ViennaRNA/DoxygenLayout.xml
share/ViennaRNA/bin/RNAdesign.pl
share/ViennaRNA/bin/b2mt.pl
share/ViennaRNA/bin/cmount.pl
share/ViennaRNA/bin/coloraln.pl
share/ViennaRNA/bin/dpzoom.pl
share/ViennaRNA/bin/mountain.pl
share/ViennaRNA/bin/refold.pl
share/ViennaRNA/bin/relplot.pl
share/ViennaRNA/bin/rotate_ss.pl
share/ViennaRNA/bin/switch.pl
share/ViennaRNA/dna_mathews1999.par
share/ViennaRNA/dna_mathews2004.par
share/ViennaRNA/rna_andronescu2007.par
share/ViennaRNA/rna_langdon2018.par
share/ViennaRNA/rna_misc_special_hairpins.par
share/ViennaRNA/rna_mod_7DA_parameters.json
share/ViennaRNA/rna_mod_dihydrouridine_parameters.json
share/ViennaRNA/rna_mod_inosine_parameters.json
share/ViennaRNA/rna_mod_m6A_parameters.json
share/ViennaRNA/rna_mod_pseudouridine_parameters.json
share/ViennaRNA/rna_mod_purine_parameters.json
share/ViennaRNA/rna_mod_template_parameters.json
share/ViennaRNA/rna_turner1999.par
share/ViennaRNA/rna_turner2004.par
share/ViennaRNA/viennarna.bib