PORTNAME=	ad2vcf
DISTVERSION=	0.1.6-19
DISTVERSIONSUFFIX=	-gf42ae91
CATEGORIES=	biology

MAINTAINER=	jwb@FreeBSD.org
COMMENT=	Add allelic depth info from a SAM stream to a VCF file
WWW=		https://github.com/auerlab/ad2vcf

LICENSE=	BSD2CLAUSE
LICENSE_FILE=	${WRKSRC}/LICENSE

LIB_DEPENDS=	libbiolibc.so:biology/biolibc libxtend.so:devel/libxtend

USE_GITHUB=	yes
GH_ACCOUNT=	auerlab

MAKE_ARGS=	MANPREFIX=${PREFIX}/share
MAKE_ENV+=	VERSION=${PORTVERSION}
PLIST_FILES=	bin/ad2vcf share/man/man1/ad2vcf.1.gz

pre-build:
	(cd ${WRKSRC} && ${MAKE} LOCALBASE=${LOCALBASE} depend)

do-test:
	(cd ${WRKSRC}/Test && ./run-test.sh)

.include <bsd.port.mk>