bin/abba-baba
bin/bFst
bin/bed2region
bin/bgziptabix
bin/dumpContigsFromHeader
bin/genotypeSummary
bin/hapLrt
bin/iHS
bin/meltEHH
bin/normalize-iHS
bin/pFst
bin/pVst
bin/permuteGPAT++
bin/permuteSmooth
bin/plotHaps
bin/popStats
bin/segmentFst
bin/segmentIhs
bin/sequenceDiversity
bin/smoother
bin/vcf2bed.py
bin/vcf2dag
bin/vcf2fasta
bin/vcf2sqlite.py
bin/vcf2tsv
bin/vcf_strip_extra_headers
bin/vcfaddinfo
bin/vcfafpath
bin/vcfallelicprimitives
bin/vcfaltcount
bin/vcfannotate
bin/vcfannotategenotypes
bin/vcfbiallelic
bin/vcfbreakmulti
bin/vcfcat
bin/vcfcheck
bin/vcfclassify
bin/vcfcleancomplex
bin/vcfclearid
bin/vcfclearinfo
bin/vcfcombine
bin/vcfcommonsamples
bin/vcfcomplex
bin/vcfcountalleles
bin/vcfcreatemulti
bin/vcfdistance
bin/vcfecho
bin/vcfentropy
bin/vcfevenregions
bin/vcffilter
bin/vcffirstheader
bin/vcffixup
bin/vcfflatten
bin/vcfgeno2alleles
bin/vcfgeno2haplo
bin/vcfgenosamplenames
bin/vcfgenosummarize
bin/vcfgenotypecompare
bin/vcfgenotypes
bin/vcfglbound
bin/vcfglxgt
bin/vcfgtcompare.sh
bin/vcfhetcount
bin/vcfhethomratio
bin/vcfindelproximity
bin/vcfindels
bin/vcfindex
bin/vcfinfo2qual
bin/vcfinfosummarize
bin/vcfintersect
bin/vcfjoincalls
bin/vcfkeepgeno
bin/vcfkeepinfo
bin/vcfkeepsamples
bin/vcfld
bin/vcfleftalign
bin/vcflength
bin/vcfmultiallelic
bin/vcfmultiway
bin/vcfmultiwayscripts
bin/vcfnobiallelicsnps
bin/vcfnoindels
bin/vcfnosnps
bin/vcfnulldotslashdot
bin/vcfnullgenofields
bin/vcfnumalt
bin/vcfoverlay
bin/vcfparsealts
bin/vcfplotaltdiscrepancy.r
bin/vcfplotaltdiscrepancy.sh
bin/vcfplotsitediscrepancy.r
bin/vcfplottstv.sh
bin/vcfprimers
bin/vcfprintaltdiscrepancy.r
bin/vcfprintaltdiscrepancy.sh
bin/vcfqual2info
bin/vcfqualfilter
bin/vcfrandom
bin/vcfrandomsample
bin/vcfregionreduce
bin/vcfregionreduce_and_cut
bin/vcfregionreduce_pipe
bin/vcfregionreduce_uncompressed
bin/vcfremap
bin/vcfremoveaberrantgenotypes
bin/vcfremovenonATGC
bin/vcfremovesamples
bin/vcfroc
bin/vcfsample2info
bin/vcfsamplediff
bin/vcfsamplenames
bin/vcfsitesummarize
bin/vcfsnps
bin/vcfsort
bin/vcfstats
bin/vcfstreamsort
bin/vcfuniq
bin/vcfuniqalleles
bin/vcfvarstats
bin/vcfwave
bin/wcFst
include/BandedSmithWaterman.h
include/BedReader.h
include/Fasta.h
include/IndelAllele.h
include/IntervalTree.h
include/LargeFileSupport.h
include/LeftAlign.h
include/LeftAlign.hpp
include/Mosaik.h
include/Region.h
include/Repeats.h
include/SmithWatermanGotoh.h
include/Variant.h
include/allele.hpp
include/catch.hpp
include/cdflib.hpp
include/cigar.hpp
include/convert.h
include/disorder.h
include/filevercmp.h
include/gpatInfo.hpp
include/join.h
include/makeUnique.h
include/mt19937ar.h
include/multichoose.h
include/multipermute.h
include/murmur3.hpp
include/pdflib.hpp
include/rkmh.hpp
include/rnglib.hpp
include/split.h
include/ssw.hpp
include/ssw_cpp.hpp
include/var.hpp
include/vcf-c-api.h
include/vcf-wfa.h
lib/libvcflib.a
%%ZIG%%lib/libzig.a
lib/pyvcflib%%PYTHON_EXT_SUFFIX%%.so
share/man/man1/abba-baba.1.gz
share/man/man1/bFst.1.gz
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