bin/LocARNA_RNAz.pm
bin/RNAz.pm
bin/aln-seqs.pl
bin/aln2fa.pl
bin/alnsel.pl
bin/average-dot.pl
bin/benchmark-plot.R
bin/dot2pp
bin/exparna_p
bin/exploc_p
bin/gen-reliab-dot.pl
bin/locarna
bin/locarna-mea.pl
bin/locarna-motif-scan
bin/locarna_deviation
bin/locarna_mcc
bin/locarna_p
bin/locarna_rnafold_pp
bin/locarnap-predict-and-plot.pl
bin/locarnap-realign-all.pl
bin/locarnap-revcomp.pl
bin/locarnap-revisit-RNAz-hits.pl
bin/locarnap_fit
bin/locarnate
bin/mlocarna
bin/mlocarna_nnames
bin/plot-bmprobs
bin/pp2dot
bin/reliability-profile.pl
bin/ribosum2cc
bin/sparse
include/LocARNA-2.0/LocARNA/aligner.hh
include/LocARNA-2.0/LocARNA/aligner_impl.hh
include/LocARNA-2.0/LocARNA/aligner_n.hh
include/LocARNA-2.0/LocARNA/aligner_p.hh
include/LocARNA-2.0/LocARNA/aligner_p.icc
include/LocARNA-2.0/LocARNA/aligner_params.hh
include/LocARNA-2.0/LocARNA/aligner_restriction.hh
include/LocARNA-2.0/LocARNA/alignment.hh
include/LocARNA-2.0/LocARNA/alignment_impl.hh
include/LocARNA-2.0/LocARNA/alphabet.hh
include/LocARNA-2.0/LocARNA/alphabet.icc
include/LocARNA-2.0/LocARNA/anchor_constraints.hh
include/LocARNA-2.0/LocARNA/arc_matches.hh
include/LocARNA-2.0/LocARNA/aux.hh
include/LocARNA-2.0/LocARNA/base_pair_filter.hh
include/LocARNA-2.0/LocARNA/basepairs.hh
include/LocARNA-2.0/LocARNA/confusion_matrix.hh
include/LocARNA-2.0/LocARNA/discrete_distribution.hh
include/LocARNA-2.0/LocARNA/edge_probs.hh
include/LocARNA-2.0/LocARNA/edge_probs.icc
include/LocARNA-2.0/LocARNA/exact_matcher.hh
include/LocARNA-2.0/LocARNA/ext_rna_data.hh
include/LocARNA-2.0/LocARNA/ext_rna_data_impl.hh
include/LocARNA-2.0/LocARNA/free_endgaps.hh
include/LocARNA-2.0/LocARNA/global_stopwatch.hh
include/LocARNA-2.0/LocARNA/infty_int.hh
include/LocARNA-2.0/LocARNA/main_helper.icc
include/LocARNA-2.0/LocARNA/matrices.hh
include/LocARNA-2.0/LocARNA/matrix.hh
include/LocARNA-2.0/LocARNA/mcc_matrices.hh
include/LocARNA-2.0/LocARNA/multiple_alignment.hh
include/LocARNA-2.0/LocARNA/named_arguments.hh
include/LocARNA-2.0/LocARNA/options.hh
include/LocARNA-2.0/LocARNA/pfold_params.hh
include/LocARNA-2.0/LocARNA/quadmath.hh
include/LocARNA-2.0/LocARNA/ribofit.hh
include/LocARNA-2.0/LocARNA/ribofit_will2014.icc
include/LocARNA-2.0/LocARNA/ribofit_will2014.ihh
include/LocARNA-2.0/LocARNA/ribosum.hh
include/LocARNA-2.0/LocARNA/ribosum85_60.icc
include/LocARNA-2.0/LocARNA/rna_data.hh
include/LocARNA-2.0/LocARNA/rna_data_impl.hh
include/LocARNA-2.0/LocARNA/rna_ensemble.hh
include/LocARNA-2.0/LocARNA/rna_ensemble_impl.hh
include/LocARNA-2.0/LocARNA/rna_structure.hh
include/LocARNA-2.0/LocARNA/scoring.hh
include/LocARNA-2.0/LocARNA/scoring_fwd.hh
include/LocARNA-2.0/LocARNA/sequence.hh
include/LocARNA-2.0/LocARNA/sequence_annotation.hh
include/LocARNA-2.0/LocARNA/sparse_matrix.hh
include/LocARNA-2.0/LocARNA/sparse_vector.hh
include/LocARNA-2.0/LocARNA/sparse_vector_base.hh
include/LocARNA-2.0/LocARNA/sparsification_mapper.hh
include/LocARNA-2.0/LocARNA/std_help_text.ihh
include/LocARNA-2.0/LocARNA/stopwatch.hh
include/LocARNA-2.0/LocARNA/stral_score.hh
include/LocARNA-2.0/LocARNA/string1.hh
include/LocARNA-2.0/LocARNA/trace_controller.hh
include/LocARNA-2.0/LocARNA/tuples.hh
include/LocARNA-2.0/LocARNA/zip.hh
lib/libLocARNA-2.0.a
lib/libLocARNA-2.0.so
lib/libLocARNA-2.0.so.1
lib/libLocARNA-2.0.so.1.0.4
lib/perl/MLocarna.pm
lib/perl/MLocarna/Aux.pm
lib/perl/MLocarna/MatchProbs.pm
lib/perl/MLocarna/NameNormalizer.pm
lib/perl/MLocarna/PairwiseAligners.pm
lib/perl/MLocarna/SparseMatrix.pm
lib/perl/MLocarna/Tree.pm
lib/perl/MLocarna/threaded.pm
lib/perl/MLocarna/unthreaded.pm
libdata/pkgconfig/LocARNA-2.0.pc
share/man/man1/aln-seqs.pl.1.gz
share/man/man1/aln2fa.pl.1.gz
share/man/man1/alnsel.pl.1.gz
share/man/man1/average-dot.pl.1.gz
share/man/man1/dot2pp.1.gz
share/man/man1/exparna_p.1.gz
share/man/man1/exploc_p.1.gz
share/man/man1/gen-reliab-dot.pl.1.gz
share/man/man1/locarna-mea.pl.1.gz
share/man/man1/locarna-motif-scan.1.gz
share/man/man1/locarna.1.gz
share/man/man1/locarna_deviation.1.gz
share/man/man1/locarna_mcc.1.gz
share/man/man1/locarna_p.1.gz
share/man/man1/locarna_rnafold_pp.1.gz
share/man/man1/locarnap-predict-and-plot.pl.1.gz
share/man/man1/locarnap-realign-all.pl.1.gz
share/man/man1/locarnap-revcomp.pl.1.gz
share/man/man1/locarnap-revisit-RNAz-hits.pl.1.gz
share/man/man1/locarnap_fit.1.gz
share/man/man1/locarnate.1.gz
share/man/man1/mlocarna.1.gz
share/man/man1/mlocarna_nnames.1.gz
share/man/man1/plot-bmprobs.1.gz
share/man/man1/pp2dot.1.gz
share/man/man1/reliability-profile.pl.1.gz
share/man/man1/ribosum2cc.1.gz
share/man/man1/sparse.1.gz
%%DATADIR%%/Matrices/RIBOSUM85_60