augustus/bin/aln2wig
augustus/bin/augustus
augustus/bin/bam2hints
augustus/bin/bam2wig
augustus/bin/compileSpliceCands
augustus/bin/etraining
augustus/bin/fastBlockSearch
augustus/bin/filterBam
augustus/bin/getSeq
augustus/bin/homGeneMapping
augustus/bin/joingenes
augustus/bin/load2db
augustus/bin/load2sqlitedb
augustus/bin/pp_simScore
augustus/bin/prepareAlign
augustus/config/cgp/cgp_param_21features_accuracy_largerGrid.convDivCorrect.cfg
augustus/config/cgp/log_reg_parameters_arabidopsis.cfg
augustus/config/cgp/log_reg_parameters_default.cfg
augustus/config/cgp/log_reg_parameters_fly.cfg
augustus/config/cgp/log_reg_parameters_human.cfg
augustus/config/cgp/log_reg_parameters_primates.cfg
augustus/config/cgp/log_reg_parameters_s_aureus.cfg
augustus/config/extrinsic/extrinsic-cgp.cfg
augustus/config/extrinsic/extrinsic.E.XNT.cfg
augustus/config/extrinsic/extrinsic.E.cfg
augustus/config/extrinsic/extrinsic.M.RM.E.W.P.cfg
augustus/config/extrinsic/extrinsic.M.RM.E.W.cfg
augustus/config/extrinsic/extrinsic.M.RM.PB.cfg
augustus/config/extrinsic/extrinsic.ME.cfg
augustus/config/extrinsic/extrinsic.MEMS.cfg
augustus/config/extrinsic/extrinsic.MP.cfg
augustus/config/extrinsic/extrinsic.MPE.cfg
augustus/config/extrinsic/extrinsic.MT.cfg
augustus/config/extrinsic/extrinsic.cfg
augustus/config/model/constraints_shadow_partial.txt
augustus/config/model/constraints_shadow_partial_utr.txt
augustus/config/model/ovlp_len.pbl
augustus/config/model/ovlp_len_archaea.pbl
augustus/config/model/states_shadow.cfg
augustus/config/model/states_shadow_2igenic.cfg
augustus/config/model/states_shadow_bacterium.cfg
augustus/config/model/states_shadow_intronless.cfg
augustus/config/model/states_shadow_utr.cfg
augustus/config/model/states_shadow_utr_nc.cfg
augustus/config/model/states_singlestrand.cfg
augustus/config/model/states_singlestrand_2igenic.cfg
augustus/config/model/trans_shadow_atleastone.pbl
augustus/config/model/trans_shadow_bacterium.pbl
augustus/config/model/trans_shadow_complete.pbl
augustus/config/model/trans_shadow_complete_utr.pbl
augustus/config/model/trans_shadow_exactlyone.pbl
augustus/config/model/trans_shadow_intronless.pbl
augustus/config/model/trans_shadow_partial.pbl
augustus/config/model/trans_shadow_partial_utr.pbl
augustus/config/model/trans_shadow_partial_utr_nc.pbl
augustus/config/model/trans_singlestrand_atleastone.pbl
augustus/config/model/trans_singlestrand_complete.pbl
augustus/config/model/trans_singlestrand_exactlyone.pbl
augustus/config/model/trans_singlestrand_partial.pbl
augustus/config/parameters/AUG_CMDLN_PARAMETERS.md
augustus/config/parameters/aug_cmdln_parameters.json
augustus/config/profile/blosum55.qij
augustus/config/profile/blosum62.qij
augustus/config/profile/default.qij
augustus/config/species/Anopheles_gambiae/Anopheles_gambiae_exon_probs.pbl
augustus/config/species/Anopheles_gambiae/Anopheles_gambiae_igenic_probs.pbl
augustus/config/species/Anopheles_gambiae/Anopheles_gambiae_intron_probs.pbl
augustus/config/species/Anopheles_gambiae/Anopheles_gambiae_metapars.cfg
augustus/config/species/Anopheles_gambiae/Anopheles_gambiae_metapars.cgp.cfg
augustus/config/species/Anopheles_gambiae/Anopheles_gambiae_metapars.utr.cfg
augustus/config/species/Anopheles_gambiae/Anopheles_gambiae_parameters.cfg
augustus/config/species/Anopheles_gambiae/Anopheles_gambiae_weightmatrix.txt
augustus/config/species/Anopheles_gambiae/README.txt
augustus/config/species/Argopecten_irradians/Argopecten_irradians_exon_probs.pbl
augustus/config/species/Argopecten_irradians/Argopecten_irradians_igenic_probs.pbl
augustus/config/species/Argopecten_irradians/Argopecten_irradians_intron_probs.pbl
augustus/config/species/Argopecten_irradians/Argopecten_irradians_metapars.cfg
augustus/config/species/Argopecten_irradians/Argopecten_irradians_metapars.cgp.cfg
augustus/config/species/Argopecten_irradians/Argopecten_irradians_metapars.utr.cfg
augustus/config/species/Argopecten_irradians/Argopecten_irradians_parameters.cfg
augustus/config/species/Argopecten_irradians/Argopecten_irradians_weightmatrix.txt
augustus/config/species/Argopecten_irradians/README.txt
augustus/config/species/Aurelia_aurita/Aurelia_aurita_exon_probs.pbl
augustus/config/species/Aurelia_aurita/Aurelia_aurita_igenic_probs.pbl
augustus/config/species/Aurelia_aurita/Aurelia_aurita_intron_probs.pbl
augustus/config/species/Aurelia_aurita/Aurelia_aurita_metapars.cfg
augustus/config/species/Aurelia_aurita/Aurelia_aurita_metapars.cgp.cfg
augustus/config/species/Aurelia_aurita/Aurelia_aurita_metapars.utr.cfg
augustus/config/species/Aurelia_aurita/Aurelia_aurita_parameters.cfg
augustus/config/species/Aurelia_aurita/Aurelia_aurita_weightmatrix.txt
augustus/config/species/Aurelia_aurita/README.txt
augustus/config/species/Bathycoccus_prasinos/Bathycoccus_prasinos_exon_probs.pbl
augustus/config/species/Bathycoccus_prasinos/Bathycoccus_prasinos_igenic_probs.pbl
augustus/config/species/Bathycoccus_prasinos/Bathycoccus_prasinos_intron_probs.pbl
augustus/config/species/Bathycoccus_prasinos/Bathycoccus_prasinos_metapars.cfg
augustus/config/species/Bathycoccus_prasinos/Bathycoccus_prasinos_metapars.cgp.cfg
augustus/config/species/Bathycoccus_prasinos/Bathycoccus_prasinos_metapars.utr.cfg
augustus/config/species/Bathycoccus_prasinos/Bathycoccus_prasinos_parameters.cfg
augustus/config/species/Bathycoccus_prasinos/Bathycoccus_prasinos_weightmatrix.txt
augustus/config/species/Bathycoccus_prasinos/README.txt
augustus/config/species/Berviolum_minutum/Berviolum_minutum_exon_probs.pbl
augustus/config/species/Berviolum_minutum/Berviolum_minutum_igenic_probs.pbl
augustus/config/species/Berviolum_minutum/Berviolum_minutum_intron_probs.pbl
augustus/config/species/Berviolum_minutum/Berviolum_minutum_metapars.cfg
augustus/config/species/Berviolum_minutum/Berviolum_minutum_metapars.cgp.cfg
augustus/config/species/Berviolum_minutum/Berviolum_minutum_metapars.utr.cfg
augustus/config/species/Berviolum_minutum/Berviolum_minutum_parameters.cfg
augustus/config/species/Berviolum_minutum/Berviolum_minutum_weightmatrix.txt
augustus/config/species/Berviolum_minutum/README.txt
augustus/config/species/Branchiostoma_floridae/Branchiostoma_floridae_exon_probs.pbl
augustus/config/species/Branchiostoma_floridae/Branchiostoma_floridae_igenic_probs.pbl
augustus/config/species/Branchiostoma_floridae/Branchiostoma_floridae_intron_probs.pbl
augustus/config/species/Branchiostoma_floridae/Branchiostoma_floridae_metapars.cfg
augustus/config/species/Branchiostoma_floridae/Branchiostoma_floridae_metapars.cgp.cfg
augustus/config/species/Branchiostoma_floridae/Branchiostoma_floridae_metapars.utr.cfg
augustus/config/species/Branchiostoma_floridae/Branchiostoma_floridae_parameters.cfg
augustus/config/species/Branchiostoma_floridae/Branchiostoma_floridae_weightmatrix.txt
augustus/config/species/Branchiostoma_floridae/README.txt
augustus/config/species/Cassiopea_xamachana/Cassiopea_xamachana_exon_probs.pbl
augustus/config/species/Cassiopea_xamachana/Cassiopea_xamachana_igenic_probs.pbl
augustus/config/species/Cassiopea_xamachana/Cassiopea_xamachana_intron_probs.pbl
augustus/config/species/Cassiopea_xamachana/Cassiopea_xamachana_metapars.cfg
augustus/config/species/Cassiopea_xamachana/Cassiopea_xamachana_metapars.cgp.cfg
augustus/config/species/Cassiopea_xamachana/Cassiopea_xamachana_metapars.utr.cfg
augustus/config/species/Cassiopea_xamachana/Cassiopea_xamachana_parameters.cfg
augustus/config/species/Cassiopea_xamachana/Cassiopea_xamachana_weightmatrix.txt
augustus/config/species/Chlamydomonas_eustigma/Chlamydomonas_eustigma_exon_probs.pbl
augustus/config/species/Chlamydomonas_eustigma/Chlamydomonas_eustigma_igenic_probs.pbl
augustus/config/species/Chlamydomonas_eustigma/Chlamydomonas_eustigma_intron_probs.pbl
augustus/config/species/Chlamydomonas_eustigma/Chlamydomonas_eustigma_metapars.cfg
augustus/config/species/Chlamydomonas_eustigma/Chlamydomonas_eustigma_metapars.cgp.cfg
augustus/config/species/Chlamydomonas_eustigma/Chlamydomonas_eustigma_metapars.utr.cfg
augustus/config/species/Chlamydomonas_eustigma/Chlamydomonas_eustigma_parameters.cfg
augustus/config/species/Chlamydomonas_eustigma/Chlamydomonas_eustigma_weightmatrix.txt
augustus/config/species/Chlamydomonas_eustigma/README.txt
augustus/config/species/Chloropicon_primus/Chloropicon_primus_exon_probs.pbl
augustus/config/species/Chloropicon_primus/Chloropicon_primus_igenic_probs.pbl
augustus/config/species/Chloropicon_primus/Chloropicon_primus_intron_probs.pbl
augustus/config/species/Chloropicon_primus/Chloropicon_primus_metapars.cfg
augustus/config/species/Chloropicon_primus/Chloropicon_primus_metapars.cgp.cfg
augustus/config/species/Chloropicon_primus/Chloropicon_primus_metapars.utr.cfg
augustus/config/species/Chloropicon_primus/Chloropicon_primus_parameters.cfg
augustus/config/species/Chloropicon_primus/Chloropicon_primus_weightmatrix.txt
augustus/config/species/Chloropicon_primus/README.txt
augustus/config/species/Chrysaora_chesapeakei/Chrysaora_chesapeakei_exon_probs.pbl
augustus/config/species/Chrysaora_chesapeakei/Chrysaora_chesapeakei_igenic_probs.pbl
augustus/config/species/Chrysaora_chesapeakei/Chrysaora_chesapeakei_intron_probs.pbl
augustus/config/species/Chrysaora_chesapeakei/Chrysaora_chesapeakei_metapars.cfg
augustus/config/species/Chrysaora_chesapeakei/Chrysaora_chesapeakei_metapars.cgp.cfg
augustus/config/species/Chrysaora_chesapeakei/Chrysaora_chesapeakei_metapars.utr.cfg
augustus/config/species/Chrysaora_chesapeakei/Chrysaora_chesapeakei_parameters.cfg
augustus/config/species/Chrysaora_chesapeakei/Chrysaora_chesapeakei_weightmatrix.txt
augustus/config/species/Chrysaora_chesapeakei/README.txt
augustus/config/species/Conidiobolus_coronatus/Conidiobolus_coronatus_exon_probs.pbl
augustus/config/species/Conidiobolus_coronatus/Conidiobolus_coronatus_igenic_probs.pbl
augustus/config/species/Conidiobolus_coronatus/Conidiobolus_coronatus_intron_probs.pbl
augustus/config/species/Conidiobolus_coronatus/Conidiobolus_coronatus_metapars.cfg
augustus/config/species/Conidiobolus_coronatus/Conidiobolus_coronatus_metapars.utr.cfg
augustus/config/species/Conidiobolus_coronatus/Conidiobolus_coronatus_parameters.cfg
augustus/config/species/Conidiobolus_coronatus/Conidiobolus_coronatus_utr_probs.pbl
augustus/config/species/Conidiobolus_coronatus/Conidiobolus_coronatus_weightmatrix.txt
augustus/config/species/Cryptosporidium_hominis/Cryptosporidium_hominis_exon_probs.pbl
augustus/config/species/Cryptosporidium_hominis/Cryptosporidium_hominis_igenic_probs.pbl
augustus/config/species/Cryptosporidium_hominis/Cryptosporidium_hominis_intron_probs.pbl
augustus/config/species/Cryptosporidium_hominis/Cryptosporidium_hominis_metapars.cfg
augustus/config/species/Cryptosporidium_hominis/Cryptosporidium_hominis_metapars.cgp.cfg
augustus/config/species/Cryptosporidium_hominis/Cryptosporidium_hominis_metapars.utr.cfg
augustus/config/species/Cryptosporidium_hominis/Cryptosporidium_hominis_parameters.cfg
augustus/config/species/Cryptosporidium_hominis/Cryptosporidium_hominis_weightmatrix.txt
augustus/config/species/Cryptosporidium_hominis/README.txt
augustus/config/species/Cyclotella_cryptica/Cyclotella_cryptica_exon_probs.pbl
augustus/config/species/Cyclotella_cryptica/Cyclotella_cryptica_igenic_probs.pbl
augustus/config/species/Cyclotella_cryptica/Cyclotella_cryptica_intron_probs.pbl
augustus/config/species/Cyclotella_cryptica/Cyclotella_cryptica_metapars.cfg
augustus/config/species/Cyclotella_cryptica/Cyclotella_cryptica_metapars.cgp.cfg
augustus/config/species/Cyclotella_cryptica/Cyclotella_cryptica_metapars.utr.cfg
augustus/config/species/Cyclotella_cryptica/Cyclotella_cryptica_parameters.cfg
augustus/config/species/Cyclotella_cryptica/Cyclotella_cryptica_weightmatrix.txt
augustus/config/species/Cyclotella_cryptica/README.txt
augustus/config/species/Dermasterias_imbricata/Dermasterias_imbricata_exon_probs.pbl
augustus/config/species/Dermasterias_imbricata/Dermasterias_imbricata_igenic_probs.pbl
augustus/config/species/Dermasterias_imbricata/Dermasterias_imbricata_intron_probs.pbl
augustus/config/species/Dermasterias_imbricata/Dermasterias_imbricata_metapars.cfg
augustus/config/species/Dermasterias_imbricata/Dermasterias_imbricata_metapars.cgp.cfg
augustus/config/species/Dermasterias_imbricata/Dermasterias_imbricata_metapars.utr.cfg
augustus/config/species/Dermasterias_imbricata/Dermasterias_imbricata_parameters.cfg
augustus/config/species/Dermasterias_imbricata/Dermasterias_imbricata_weightmatrix.txt
augustus/config/species/Dermasterias_imbricata/README.txt
augustus/config/species/Dunaliella_salina/Dunaliella_salina_exon_probs.pbl
augustus/config/species/Dunaliella_salina/Dunaliella_salina_igenic_probs.pbl
augustus/config/species/Dunaliella_salina/Dunaliella_salina_intron_probs.pbl
augustus/config/species/Dunaliella_salina/Dunaliella_salina_metapars.cfg
augustus/config/species/Dunaliella_salina/Dunaliella_salina_metapars.cgp.cfg
augustus/config/species/Dunaliella_salina/Dunaliella_salina_metapars.utr.cfg
augustus/config/species/Dunaliella_salina/Dunaliella_salina_parameters.cfg
augustus/config/species/Dunaliella_salina/Dunaliella_salina_weightmatrix.txt
augustus/config/species/Dunaliella_salina/README.txt
augustus/config/species/E_coli_K12/E_coli_K12_exon_probs.pbl
augustus/config/species/E_coli_K12/E_coli_K12_igenic_probs.pbl
augustus/config/species/E_coli_K12/E_coli_K12_metapars.cfg
augustus/config/species/E_coli_K12/E_coli_K12_metapars.utr.cfg
augustus/config/species/E_coli_K12/E_coli_K12_ovlp_len.pbl
augustus/config/species/E_coli_K12/E_coli_K12_parameters.cfg
augustus/config/species/E_coli_K12/E_coli_K12_trans_shadow_bacterium.pbl
augustus/config/species/E_coli_K12/E_coli_K12_weightmatrix.txt
augustus/config/species/Ectocarpus_siliculosus/Ectocarpus_siliculosus_exon_probs.pbl
augustus/config/species/Ectocarpus_siliculosus/Ectocarpus_siliculosus_igenic_probs.pbl
augustus/config/species/Ectocarpus_siliculosus/Ectocarpus_siliculosus_intron_probs.pbl
augustus/config/species/Ectocarpus_siliculosus/Ectocarpus_siliculosus_metapars.cfg
augustus/config/species/Ectocarpus_siliculosus/Ectocarpus_siliculosus_metapars.cgp.cfg
augustus/config/species/Ectocarpus_siliculosus/Ectocarpus_siliculosus_metapars.utr.cfg
augustus/config/species/Ectocarpus_siliculosus/Ectocarpus_siliculosus_parameters.cfg
augustus/config/species/Ectocarpus_siliculosus/Ectocarpus_siliculosus_weightmatrix.txt
augustus/config/species/Ectocarpus_siliculosus/README.txt
augustus/config/species/Encephalitozoon_cuniculi/Encephalitozoon_cuniculi_exon_probs.pbl
augustus/config/species/Encephalitozoon_cuniculi/Encephalitozoon_cuniculi_igenic_probs.pbl
augustus/config/species/Encephalitozoon_cuniculi/Encephalitozoon_cuniculi_intron_probs.pbl
augustus/config/species/Encephalitozoon_cuniculi/Encephalitozoon_cuniculi_metapars.cfg
augustus/config/species/Encephalitozoon_cuniculi/Encephalitozoon_cuniculi_metapars.cgp.cfg
augustus/config/species/Encephalitozoon_cuniculi/Encephalitozoon_cuniculi_metapars.utr.cfg
augustus/config/species/Encephalitozoon_cuniculi/Encephalitozoon_cuniculi_parameters.cfg
augustus/config/species/Encephalitozoon_cuniculi/Encephalitozoon_cuniculi_weightmatrix.txt
augustus/config/species/Encephalitozoon_cuniculi/README.txt
augustus/config/species/Fistulifera_solaris/Fistulifera_solaris_exon_probs.pbl
augustus/config/species/Fistulifera_solaris/Fistulifera_solaris_igenic_probs.pbl
augustus/config/species/Fistulifera_solaris/Fistulifera_solaris_intron_probs.pbl
augustus/config/species/Fistulifera_solaris/Fistulifera_solaris_metapars.cfg
augustus/config/species/Fistulifera_solaris/Fistulifera_solaris_metapars.cgp.cfg
augustus/config/species/Fistulifera_solaris/Fistulifera_solaris_metapars.utr.cfg
augustus/config/species/Fistulifera_solaris/Fistulifera_solaris_parameters.cfg
augustus/config/species/Fistulifera_solaris/Fistulifera_solaris_weightmatrix.txt
augustus/config/species/Fistulifera_solaris/README.txt
augustus/config/species/Fragilariopsis_cylindrus_CCMP1102/Fragilariopsis_cylindrus_CCMP1102_exon_probs.pbl
augustus/config/species/Fragilariopsis_cylindrus_CCMP1102/Fragilariopsis_cylindrus_CCMP1102_igenic_probs.pbl
augustus/config/species/Fragilariopsis_cylindrus_CCMP1102/Fragilariopsis_cylindrus_CCMP1102_intron_probs.pbl
augustus/config/species/Fragilariopsis_cylindrus_CCMP1102/Fragilariopsis_cylindrus_CCMP1102_metapars.cfg
augustus/config/species/Fragilariopsis_cylindrus_CCMP1102/Fragilariopsis_cylindrus_CCMP1102_metapars.cgp.cfg
augustus/config/species/Fragilariopsis_cylindrus_CCMP1102/Fragilariopsis_cylindrus_CCMP1102_metapars.utr.cfg
augustus/config/species/Fragilariopsis_cylindrus_CCMP1102/Fragilariopsis_cylindrus_CCMP1102_parameters.cfg
augustus/config/species/Fragilariopsis_cylindrus_CCMP1102/Fragilariopsis_cylindrus_CCMP1102_weightmatrix.txt
augustus/config/species/Fragilariopsis_cylindrus_CCMP1102/README.txt
augustus/config/species/Gonapodya_prolifera/Gonapodya_prolifera_exon_probs.pbl
augustus/config/species/Gonapodya_prolifera/Gonapodya_prolifera_igenic_probs.pbl
augustus/config/species/Gonapodya_prolifera/Gonapodya_prolifera_intron_probs.pbl
augustus/config/species/Gonapodya_prolifera/Gonapodya_prolifera_metapars.cfg
augustus/config/species/Gonapodya_prolifera/Gonapodya_prolifera_metapars.cgp.cfg
augustus/config/species/Gonapodya_prolifera/Gonapodya_prolifera_metapars.utr.cfg
augustus/config/species/Gonapodya_prolifera/Gonapodya_prolifera_parameters.cfg
augustus/config/species/Gonapodya_prolifera/Gonapodya_prolifera_weightmatrix.txt
augustus/config/species/Gonapodya_prolifera/README.txt
augustus/config/species/Hydra_vulgaris/Hydra_vulgaris_exon_probs.pbl
augustus/config/species/Hydra_vulgaris/Hydra_vulgaris_igenic_probs.pbl
augustus/config/species/Hydra_vulgaris/Hydra_vulgaris_intron_probs.pbl
augustus/config/species/Hydra_vulgaris/Hydra_vulgaris_metapars.cfg
augustus/config/species/Hydra_vulgaris/Hydra_vulgaris_metapars.cgp.cfg
augustus/config/species/Hydra_vulgaris/Hydra_vulgaris_metapars.utr.cfg
augustus/config/species/Hydra_vulgaris/Hydra_vulgaris_parameters.cfg
augustus/config/species/Hydra_vulgaris/Hydra_vulgaris_weightmatrix.txt
augustus/config/species/Hydra_vulgaris/README.txt
augustus/config/species/Leptasterias_sp/Leptasterias_sp_exon_probs.pbl
augustus/config/species/Leptasterias_sp/Leptasterias_sp_igenic_probs.pbl
augustus/config/species/Leptasterias_sp/Leptasterias_sp_intron_probs.pbl
augustus/config/species/Leptasterias_sp/Leptasterias_sp_metapars.cfg
augustus/config/species/Leptasterias_sp/Leptasterias_sp_metapars.cgp.cfg
augustus/config/species/Leptasterias_sp/Leptasterias_sp_metapars.utr.cfg
augustus/config/species/Leptasterias_sp/Leptasterias_sp_parameters.cfg
augustus/config/species/Leptasterias_sp/Leptasterias_sp_weightmatrix.txt
augustus/config/species/Leptasterias_sp/README.txt
augustus/config/species/Loa_loa/Loa_loa_exon_probs.pbl
augustus/config/species/Loa_loa/Loa_loa_igenic_probs.pbl
augustus/config/species/Loa_loa/Loa_loa_intron_probs.pbl
augustus/config/species/Loa_loa/Loa_loa_metapars.cfg
augustus/config/species/Loa_loa/Loa_loa_metapars.cgp.cfg
augustus/config/species/Loa_loa/Loa_loa_metapars.utr.cfg
augustus/config/species/Loa_loa/Loa_loa_parameters.cfg
augustus/config/species/Loa_loa/Loa_loa_weightmatrix.txt
augustus/config/species/Loa_loa/README.txt
augustus/config/species/Micromonas_commoda/Micromonas_commoda_exon_probs.pbl
augustus/config/species/Micromonas_commoda/Micromonas_commoda_igenic_probs.pbl
augustus/config/species/Micromonas_commoda/Micromonas_commoda_intron_probs.pbl
augustus/config/species/Micromonas_commoda/Micromonas_commoda_metapars.cfg
augustus/config/species/Micromonas_commoda/Micromonas_commoda_metapars.cgp.cfg
augustus/config/species/Micromonas_commoda/Micromonas_commoda_metapars.utr.cfg
augustus/config/species/Micromonas_commoda/Micromonas_commoda_parameters.cfg
augustus/config/species/Micromonas_commoda/Micromonas_commoda_weightmatrix.txt
augustus/config/species/Micromonas_commoda/README.txt
augustus/config/species/Micromonas_pusilla/Micromonas_pusilla_exon_probs.pbl
augustus/config/species/Micromonas_pusilla/Micromonas_pusilla_igenic_probs.pbl
augustus/config/species/Micromonas_pusilla/Micromonas_pusilla_intron_probs.pbl
augustus/config/species/Micromonas_pusilla/Micromonas_pusilla_metapars.cfg
augustus/config/species/Micromonas_pusilla/Micromonas_pusilla_metapars.cgp.cfg
augustus/config/species/Micromonas_pusilla/Micromonas_pusilla_metapars.utr.cfg
augustus/config/species/Micromonas_pusilla/Micromonas_pusilla_parameters.cfg
augustus/config/species/Micromonas_pusilla/Micromonas_pusilla_weightmatrix.txt
augustus/config/species/Micromonas_pusilla/README.txt
augustus/config/species/Monoraphidium_neglectum/Monoraphidium_neglectum_exon_probs.pbl
augustus/config/species/Monoraphidium_neglectum/Monoraphidium_neglectum_igenic_probs.pbl
augustus/config/species/Monoraphidium_neglectum/Monoraphidium_neglectum_intron_probs.pbl
augustus/config/species/Monoraphidium_neglectum/Monoraphidium_neglectum_metapars.cfg
augustus/config/species/Monoraphidium_neglectum/Monoraphidium_neglectum_metapars.cgp.cfg
augustus/config/species/Monoraphidium_neglectum/Monoraphidium_neglectum_metapars.utr.cfg
augustus/config/species/Monoraphidium_neglectum/Monoraphidium_neglectum_parameters.cfg
augustus/config/species/Monoraphidium_neglectum/Monoraphidium_neglectum_weightmatrix.txt
augustus/config/species/Monoraphidium_neglectum/README.txt
augustus/config/species/Monosiga_brevicollis/Monosiga_brevicollis_exon_probs.pbl
augustus/config/species/Monosiga_brevicollis/Monosiga_brevicollis_igenic_probs.pbl
augustus/config/species/Monosiga_brevicollis/Monosiga_brevicollis_intron_probs.pbl
augustus/config/species/Monosiga_brevicollis/Monosiga_brevicollis_metapars.cfg
augustus/config/species/Monosiga_brevicollis/Monosiga_brevicollis_metapars.cgp.cfg
augustus/config/species/Monosiga_brevicollis/Monosiga_brevicollis_metapars.utr.cfg
augustus/config/species/Monosiga_brevicollis/Monosiga_brevicollis_parameters.cfg
augustus/config/species/Monosiga_brevicollis/Monosiga_brevicollis_weightmatrix.txt
augustus/config/species/Monosiga_brevicollis/README.txt
augustus/config/species/Naegleria_gruberi/Naegleria_gruberi_exon_probs.pbl
augustus/config/species/Naegleria_gruberi/Naegleria_gruberi_igenic_probs.pbl
augustus/config/species/Naegleria_gruberi/Naegleria_gruberi_intron_probs.pbl
augustus/config/species/Naegleria_gruberi/Naegleria_gruberi_metapars.cfg
augustus/config/species/Naegleria_gruberi/Naegleria_gruberi_metapars.cgp.cfg
augustus/config/species/Naegleria_gruberi/Naegleria_gruberi_metapars.utr.cfg
augustus/config/species/Naegleria_gruberi/Naegleria_gruberi_parameters.cfg
augustus/config/species/Naegleria_gruberi/Naegleria_gruberi_weightmatrix.txt
augustus/config/species/Naegleria_gruberi/README.txt
augustus/config/species/Nemopilema_nomurai/Nemopilema_nomurai_exon_probs.pbl
augustus/config/species/Nemopilema_nomurai/Nemopilema_nomurai_igenic_probs.pbl
augustus/config/species/Nemopilema_nomurai/Nemopilema_nomurai_intron_probs.pbl
augustus/config/species/Nemopilema_nomurai/Nemopilema_nomurai_metapars.cfg
augustus/config/species/Nemopilema_nomurai/Nemopilema_nomurai_metapars.cgp.cfg
augustus/config/species/Nemopilema_nomurai/Nemopilema_nomurai_metapars.utr.cfg
augustus/config/species/Nemopilema_nomurai/Nemopilema_nomurai_parameters.cfg
augustus/config/species/Nemopilema_nomurai/Nemopilema_nomurai_weightmatrix.txt
augustus/config/species/Nemopilema_nomurai/README.txt
augustus/config/species/Notospermus_geniculatus/Notospermus_geniculatus_exon_probs.pbl
augustus/config/species/Notospermus_geniculatus/Notospermus_geniculatus_igenic_probs.pbl
augustus/config/species/Notospermus_geniculatus/Notospermus_geniculatus_intron_probs.pbl
augustus/config/species/Notospermus_geniculatus/Notospermus_geniculatus_metapars.cfg
augustus/config/species/Notospermus_geniculatus/Notospermus_geniculatus_metapars.cgp.cfg
augustus/config/species/Notospermus_geniculatus/Notospermus_geniculatus_metapars.utr.cfg
augustus/config/species/Notospermus_geniculatus/Notospermus_geniculatus_parameters.cfg
augustus/config/species/Notospermus_geniculatus/Notospermus_geniculatus_weightmatrix.txt
augustus/config/species/Notospermus_geniculatus/README.txt
augustus/config/species/Ostreococcus_sp_lucimarinus/Ostreococcus_sp_lucimarinus_exon_probs.pbl
augustus/config/species/Ostreococcus_sp_lucimarinus/Ostreococcus_sp_lucimarinus_igenic_probs.pbl
augustus/config/species/Ostreococcus_sp_lucimarinus/Ostreococcus_sp_lucimarinus_intron_probs.pbl
augustus/config/species/Ostreococcus_sp_lucimarinus/Ostreococcus_sp_lucimarinus_metapars.cfg
augustus/config/species/Ostreococcus_sp_lucimarinus/Ostreococcus_sp_lucimarinus_metapars.cgp.cfg
augustus/config/species/Ostreococcus_sp_lucimarinus/Ostreococcus_sp_lucimarinus_metapars.utr.cfg
augustus/config/species/Ostreococcus_sp_lucimarinus/Ostreococcus_sp_lucimarinus_parameters.cfg
augustus/config/species/Ostreococcus_sp_lucimarinus/Ostreococcus_sp_lucimarinus_weightmatrix.txt
augustus/config/species/Ostreococcus_sp_lucimarinus/README.txt
augustus/config/species/Ostreococcus_tauri/Ostreococcus_tauri_exon_probs.pbl
augustus/config/species/Ostreococcus_tauri/Ostreococcus_tauri_igenic_probs.pbl
augustus/config/species/Ostreococcus_tauri/Ostreococcus_tauri_intron_probs.pbl
augustus/config/species/Ostreococcus_tauri/Ostreococcus_tauri_metapars.cfg
augustus/config/species/Ostreococcus_tauri/Ostreococcus_tauri_metapars.cgp.cfg
augustus/config/species/Ostreococcus_tauri/Ostreococcus_tauri_metapars.utr.cfg
augustus/config/species/Ostreococcus_tauri/Ostreococcus_tauri_parameters.cfg
augustus/config/species/Ostreococcus_tauri/Ostreococcus_tauri_weightmatrix.txt
augustus/config/species/Ostreococcus_tauri/README.txt
augustus/config/species/Paramecium_tetraurelia/Paramecium_tetraurelia_exon_probs.pbl
augustus/config/species/Paramecium_tetraurelia/Paramecium_tetraurelia_igenic_probs.pbl
augustus/config/species/Paramecium_tetraurelia/Paramecium_tetraurelia_intron_probs.pbl
augustus/config/species/Paramecium_tetraurelia/Paramecium_tetraurelia_metapars.cfg
augustus/config/species/Paramecium_tetraurelia/Paramecium_tetraurelia_metapars.cgp.cfg
augustus/config/species/Paramecium_tetraurelia/Paramecium_tetraurelia_metapars.utr.cfg
augustus/config/species/Paramecium_tetraurelia/Paramecium_tetraurelia_parameters.cfg
augustus/config/species/Paramecium_tetraurelia/Paramecium_tetraurelia_weightmatrix.txt
augustus/config/species/Paramecium_tetraurelia/README.txt
augustus/config/species/Pediculus_humanus/Pediculus_humanus_exon_probs.pbl
augustus/config/species/Pediculus_humanus/Pediculus_humanus_igenic_probs.pbl
augustus/config/species/Pediculus_humanus/Pediculus_humanus_intron_probs.pbl
augustus/config/species/Pediculus_humanus/Pediculus_humanus_metapars.cfg
augustus/config/species/Pediculus_humanus/Pediculus_humanus_metapars.cgp.cfg
augustus/config/species/Pediculus_humanus/Pediculus_humanus_metapars.utr.cfg
augustus/config/species/Pediculus_humanus/Pediculus_humanus_parameters.cfg
augustus/config/species/Pediculus_humanus/Pediculus_humanus_weightmatrix.txt
augustus/config/species/Pediculus_humanus/README.txt
augustus/config/species/Perkinsus_marinus/Perkinsus_marinus_exon_probs.pbl
augustus/config/species/Perkinsus_marinus/Perkinsus_marinus_igenic_probs.pbl
augustus/config/species/Perkinsus_marinus/Perkinsus_marinus_intron_probs.pbl
augustus/config/species/Perkinsus_marinus/Perkinsus_marinus_metapars.cfg
augustus/config/species/Perkinsus_marinus/Perkinsus_marinus_metapars.cgp.cfg
augustus/config/species/Perkinsus_marinus/Perkinsus_marinus_metapars.utr.cfg
augustus/config/species/Perkinsus_marinus/Perkinsus_marinus_parameters.cfg
augustus/config/species/Perkinsus_marinus/Perkinsus_marinus_weightmatrix.txt
augustus/config/species/Perkinsus_marinus/README.txt
augustus/config/species/Phaeodactylum_tricornutum/Phaeodactylum_tricornutum_exon_probs.pbl
augustus/config/species/Phaeodactylum_tricornutum/Phaeodactylum_tricornutum_igenic_probs.pbl
augustus/config/species/Phaeodactylum_tricornutum/Phaeodactylum_tricornutum_intron_probs.pbl
augustus/config/species/Phaeodactylum_tricornutum/Phaeodactylum_tricornutum_metapars.cfg
augustus/config/species/Phaeodactylum_tricornutum/Phaeodactylum_tricornutum_metapars.cgp.cfg
augustus/config/species/Phaeodactylum_tricornutum/Phaeodactylum_tricornutum_metapars.utr.cfg
augustus/config/species/Phaeodactylum_tricornutum/Phaeodactylum_tricornutum_parameters.cfg
augustus/config/species/Phaeodactylum_tricornutum/Phaeodactylum_tricornutum_weightmatrix.txt
augustus/config/species/Phaeodactylum_tricornutum/README.txt
augustus/config/species/Physcomitrium_patens/Physcomitrium_patens_exon_probs.pbl
augustus/config/species/Physcomitrium_patens/Physcomitrium_patens_igenic_probs.pbl
augustus/config/species/Physcomitrium_patens/Physcomitrium_patens_intron_probs.pbl
augustus/config/species/Physcomitrium_patens/Physcomitrium_patens_metapars.cfg
augustus/config/species/Physcomitrium_patens/Physcomitrium_patens_metapars.cgp.cfg
augustus/config/species/Physcomitrium_patens/Physcomitrium_patens_metapars.utr.cfg
augustus/config/species/Physcomitrium_patens/Physcomitrium_patens_parameters.cfg
augustus/config/species/Physcomitrium_patens/Physcomitrium_patens_weightmatrix.txt
augustus/config/species/Physcomitrium_patens/README.txt
augustus/config/species/Populus_trichocarpa/Populus_trichocarpa_exon_probs.pbl
augustus/config/species/Populus_trichocarpa/Populus_trichocarpa_igenic_probs.pbl
augustus/config/species/Populus_trichocarpa/Populus_trichocarpa_intron_probs.pbl
augustus/config/species/Populus_trichocarpa/Populus_trichocarpa_metapars.cfg
augustus/config/species/Populus_trichocarpa/Populus_trichocarpa_metapars.cgp.cfg
augustus/config/species/Populus_trichocarpa/Populus_trichocarpa_metapars.utr.cfg
augustus/config/species/Populus_trichocarpa/Populus_trichocarpa_parameters.cfg
augustus/config/species/Populus_trichocarpa/Populus_trichocarpa_parameters.cfg~
augustus/config/species/Populus_trichocarpa/Populus_trichocarpa_weightmatrix.txt
augustus/config/species/Pseudo-nitzschia_multistriata/Pseudo-nitzschia_multistriata_exon_probs.pbl
augustus/config/species/Pseudo-nitzschia_multistriata/Pseudo-nitzschia_multistriata_igenic_probs.pbl
augustus/config/species/Pseudo-nitzschia_multistriata/Pseudo-nitzschia_multistriata_intron_probs.pbl
augustus/config/species/Pseudo-nitzschia_multistriata/Pseudo-nitzschia_multistriata_metapars.cfg
augustus/config/species/Pseudo-nitzschia_multistriata/Pseudo-nitzschia_multistriata_metapars.cgp.cfg
augustus/config/species/Pseudo-nitzschia_multistriata/Pseudo-nitzschia_multistriata_metapars.utr.cfg
augustus/config/species/Pseudo-nitzschia_multistriata/Pseudo-nitzschia_multistriata_parameters.cfg
augustus/config/species/Pseudo-nitzschia_multistriata/Pseudo-nitzschia_multistriata_weightmatrix.txt
augustus/config/species/Pseudo-nitzschia_multistriata/README.txt
augustus/config/species/Ptychodera_flava/Ptychodera_flava_exon_probs.pbl
augustus/config/species/Ptychodera_flava/Ptychodera_flava_igenic_probs.pbl
augustus/config/species/Ptychodera_flava/Ptychodera_flava_intron_probs.pbl
augustus/config/species/Ptychodera_flava/Ptychodera_flava_metapars.cfg
augustus/config/species/Ptychodera_flava/Ptychodera_flava_metapars.cgp.cfg
augustus/config/species/Ptychodera_flava/Ptychodera_flava_metapars.utr.cfg
augustus/config/species/Ptychodera_flava/Ptychodera_flava_parameters.cfg
augustus/config/species/Ptychodera_flava/Ptychodera_flava_weightmatrix.txt
augustus/config/species/Ptychodera_flava/README.txt
augustus/config/species/Pycnopodia_helianthoides/Pycnopodia_helianthoides_exon_probs.pbl
augustus/config/species/Pycnopodia_helianthoides/Pycnopodia_helianthoides_igenic_probs.pbl
augustus/config/species/Pycnopodia_helianthoides/Pycnopodia_helianthoides_intron_probs.pbl
augustus/config/species/Pycnopodia_helianthoides/Pycnopodia_helianthoides_metapars.cfg
augustus/config/species/Pycnopodia_helianthoides/Pycnopodia_helianthoides_metapars.cgp.cfg
augustus/config/species/Pycnopodia_helianthoides/Pycnopodia_helianthoides_metapars.utr.cfg
augustus/config/species/Pycnopodia_helianthoides/Pycnopodia_helianthoides_parameters.cfg
augustus/config/species/Pycnopodia_helianthoides/Pycnopodia_helianthoides_weightmatrix.txt
augustus/config/species/Pycnopodia_helianthoides/README.txt
augustus/config/species/Raphidocelis_subcapitata/README.txt
augustus/config/species/Raphidocelis_subcapitata/Raphidocelis_subcapitata_exon_probs.pbl
augustus/config/species/Raphidocelis_subcapitata/Raphidocelis_subcapitata_igenic_probs.pbl
augustus/config/species/Raphidocelis_subcapitata/Raphidocelis_subcapitata_intron_probs.pbl
augustus/config/species/Raphidocelis_subcapitata/Raphidocelis_subcapitata_metapars.cfg
augustus/config/species/Raphidocelis_subcapitata/Raphidocelis_subcapitata_metapars.cgp.cfg
augustus/config/species/Raphidocelis_subcapitata/Raphidocelis_subcapitata_metapars.utr.cfg
augustus/config/species/Raphidocelis_subcapitata/Raphidocelis_subcapitata_parameters.cfg
augustus/config/species/Raphidocelis_subcapitata/Raphidocelis_subcapitata_weightmatrix.txt
augustus/config/species/Rhopilema_esculentum/README.txt
augustus/config/species/Rhopilema_esculentum/Rhopilema_esculentum_exon_probs.pbl
augustus/config/species/Rhopilema_esculentum/Rhopilema_esculentum_igenic_probs.pbl
augustus/config/species/Rhopilema_esculentum/Rhopilema_esculentum_intron_probs.pbl
augustus/config/species/Rhopilema_esculentum/Rhopilema_esculentum_metapars.cfg
augustus/config/species/Rhopilema_esculentum/Rhopilema_esculentum_metapars.cgp.cfg
augustus/config/species/Rhopilema_esculentum/Rhopilema_esculentum_metapars.utr.cfg
augustus/config/species/Rhopilema_esculentum/Rhopilema_esculentum_parameters.cfg
augustus/config/species/Rhopilema_esculentum/Rhopilema_esculentum_weightmatrix.txt
augustus/config/species/Ricinus_communis/README.txt
augustus/config/species/Ricinus_communis/Ricinus_communis_exon_probs.pbl
augustus/config/species/Ricinus_communis/Ricinus_communis_igenic_probs.pbl
augustus/config/species/Ricinus_communis/Ricinus_communis_intron_probs.pbl
augustus/config/species/Ricinus_communis/Ricinus_communis_metapars.cfg
augustus/config/species/Ricinus_communis/Ricinus_communis_metapars.cgp.cfg
augustus/config/species/Ricinus_communis/Ricinus_communis_metapars.utr.cfg
augustus/config/species/Ricinus_communis/Ricinus_communis_parameters.cfg
augustus/config/species/Ricinus_communis/Ricinus_communis_weightmatrix.txt
augustus/config/species/Sclerotinia_sclerotiorum/README.txt
augustus/config/species/Sclerotinia_sclerotiorum/Sclerotinia_sclerotiorum_exon_probs.pbl
augustus/config/species/Sclerotinia_sclerotiorum/Sclerotinia_sclerotiorum_igenic_probs.pbl
augustus/config/species/Sclerotinia_sclerotiorum/Sclerotinia_sclerotiorum_intron_probs.pbl
augustus/config/species/Sclerotinia_sclerotiorum/Sclerotinia_sclerotiorum_metapars.cfg
augustus/config/species/Sclerotinia_sclerotiorum/Sclerotinia_sclerotiorum_metapars.cgp.cfg
augustus/config/species/Sclerotinia_sclerotiorum/Sclerotinia_sclerotiorum_metapars.utr.cfg
augustus/config/species/Sclerotinia_sclerotiorum/Sclerotinia_sclerotiorum_parameters.cfg
augustus/config/species/Sclerotinia_sclerotiorum/Sclerotinia_sclerotiorum_weightmatrix.txt
augustus/config/species/Skeletonema_costatum/README.txt
augustus/config/species/Skeletonema_costatum/Skeletonema_costatum_exon_probs.pbl
augustus/config/species/Skeletonema_costatum/Skeletonema_costatum_igenic_probs.pbl
augustus/config/species/Skeletonema_costatum/Skeletonema_costatum_intron_probs.pbl
augustus/config/species/Skeletonema_costatum/Skeletonema_costatum_metapars.cfg
augustus/config/species/Skeletonema_costatum/Skeletonema_costatum_metapars.cgp.cfg
augustus/config/species/Skeletonema_costatum/Skeletonema_costatum_metapars.utr.cfg
augustus/config/species/Skeletonema_costatum/Skeletonema_costatum_parameters.cfg
augustus/config/species/Skeletonema_costatum/Skeletonema_costatum_weightmatrix.txt
augustus/config/species/Sordaria_macrospora/README.txt
augustus/config/species/Sordaria_macrospora/Sordaria_macrospora_exon_probs.pbl
augustus/config/species/Sordaria_macrospora/Sordaria_macrospora_igenic_probs.pbl
augustus/config/species/Sordaria_macrospora/Sordaria_macrospora_intron_probs.pbl
augustus/config/species/Sordaria_macrospora/Sordaria_macrospora_metapars.cfg
augustus/config/species/Sordaria_macrospora/Sordaria_macrospora_metapars.cgp.cfg
augustus/config/species/Sordaria_macrospora/Sordaria_macrospora_metapars.utr.cfg
augustus/config/species/Sordaria_macrospora/Sordaria_macrospora_parameters.cfg
augustus/config/species/Sordaria_macrospora/Sordaria_macrospora_weightmatrix.txt
augustus/config/species/Sphaceloma_murrayae/README.txt
augustus/config/species/Sphaceloma_murrayae/Sphaceloma_murrayae_exon_probs.pbl
augustus/config/species/Sphaceloma_murrayae/Sphaceloma_murrayae_igenic_probs.pbl
augustus/config/species/Sphaceloma_murrayae/Sphaceloma_murrayae_intron_probs.pbl
augustus/config/species/Sphaceloma_murrayae/Sphaceloma_murrayae_metapars.cfg
augustus/config/species/Sphaceloma_murrayae/Sphaceloma_murrayae_metapars.cgp.cfg
augustus/config/species/Sphaceloma_murrayae/Sphaceloma_murrayae_metapars.utr.cfg
augustus/config/species/Sphaceloma_murrayae/Sphaceloma_murrayae_parameters.cfg
augustus/config/species/Sphaceloma_murrayae/Sphaceloma_murrayae_weightmatrix.txt
augustus/config/species/Taeniopygia_guttata/README.txt
augustus/config/species/Taeniopygia_guttata/Taeniopygia_guttata_exon_probs.pbl
augustus/config/species/Taeniopygia_guttata/Taeniopygia_guttata_igenic_probs.pbl
augustus/config/species/Taeniopygia_guttata/Taeniopygia_guttata_intron_probs.pbl
augustus/config/species/Taeniopygia_guttata/Taeniopygia_guttata_metapars.cfg
augustus/config/species/Taeniopygia_guttata/Taeniopygia_guttata_metapars.cgp.cfg
augustus/config/species/Taeniopygia_guttata/Taeniopygia_guttata_metapars.utr.cfg
augustus/config/species/Taeniopygia_guttata/Taeniopygia_guttata_parameters.cfg
augustus/config/species/Taeniopygia_guttata/Taeniopygia_guttata_weightmatrix.txt
augustus/config/species/Thalassiosira_pseudonana_CCMP1335/README.txt
augustus/config/species/Thalassiosira_pseudonana_CCMP1335/Thalassiosira_pseudonana_CCMP1335_exon_probs.pbl
augustus/config/species/Thalassiosira_pseudonana_CCMP1335/Thalassiosira_pseudonana_CCMP1335_igenic_probs.pbl
augustus/config/species/Thalassiosira_pseudonana_CCMP1335/Thalassiosira_pseudonana_CCMP1335_intron_probs.pbl
augustus/config/species/Thalassiosira_pseudonana_CCMP1335/Thalassiosira_pseudonana_CCMP1335_metapars.cfg
augustus/config/species/Thalassiosira_pseudonana_CCMP1335/Thalassiosira_pseudonana_CCMP1335_metapars.cgp.cfg
augustus/config/species/Thalassiosira_pseudonana_CCMP1335/Thalassiosira_pseudonana_CCMP1335_metapars.utr.cfg
augustus/config/species/Thalassiosira_pseudonana_CCMP1335/Thalassiosira_pseudonana_CCMP1335_parameters.cfg
augustus/config/species/Thalassiosira_pseudonana_CCMP1335/Thalassiosira_pseudonana_CCMP1335_weightmatrix.txt
augustus/config/species/Trichoplax_adhaerens/README.txt
augustus/config/species/Trichoplax_adhaerens/Trichoplax_adhaerens_exon_probs.pbl
augustus/config/species/Trichoplax_adhaerens/Trichoplax_adhaerens_igenic_probs.pbl
augustus/config/species/Trichoplax_adhaerens/Trichoplax_adhaerens_intron_probs.pbl
augustus/config/species/Trichoplax_adhaerens/Trichoplax_adhaerens_metapars.cfg
augustus/config/species/Trichoplax_adhaerens/Trichoplax_adhaerens_metapars.cgp.cfg
augustus/config/species/Trichoplax_adhaerens/Trichoplax_adhaerens_metapars.utr.cfg
augustus/config/species/Trichoplax_adhaerens/Trichoplax_adhaerens_parameters.cfg
augustus/config/species/Trichoplax_adhaerens/Trichoplax_adhaerens_weightmatrix.txt
augustus/config/species/Trypanosoma_cruzi/README.txt
augustus/config/species/Trypanosoma_cruzi/Trypanosoma_cruzi_exon_probs.pbl
augustus/config/species/Trypanosoma_cruzi/Trypanosoma_cruzi_igenic_probs.pbl
augustus/config/species/Trypanosoma_cruzi/Trypanosoma_cruzi_intron_probs.pbl
augustus/config/species/Trypanosoma_cruzi/Trypanosoma_cruzi_metapars.cfg
augustus/config/species/Trypanosoma_cruzi/Trypanosoma_cruzi_metapars.cgp.cfg
augustus/config/species/Trypanosoma_cruzi/Trypanosoma_cruzi_metapars.utr.cfg
augustus/config/species/Trypanosoma_cruzi/Trypanosoma_cruzi_parameters.cfg
augustus/config/species/Trypanosoma_cruzi/Trypanosoma_cruzi_weightmatrix.txt
augustus/config/species/Vitis_vinifera/README.txt
augustus/config/species/Vitis_vinifera/Vitis_vinifera_exon_probs.pbl
augustus/config/species/Vitis_vinifera/Vitis_vinifera_igenic_probs.pbl
augustus/config/species/Vitis_vinifera/Vitis_vinifera_intron_probs.pbl
augustus/config/species/Vitis_vinifera/Vitis_vinifera_metapars.cfg
augustus/config/species/Vitis_vinifera/Vitis_vinifera_metapars.cgp.cfg
augustus/config/species/Vitis_vinifera/Vitis_vinifera_metapars.utr.cfg
augustus/config/species/Vitis_vinifera/Vitis_vinifera_parameters.cfg
augustus/config/species/Vitis_vinifera/Vitis_vinifera_weightmatrix.txt
augustus/config/species/Vitrella_brassicaformis/README.txt
augustus/config/species/Vitrella_brassicaformis/Vitrella_brassicaformis_exon_probs.pbl
augustus/config/species/Vitrella_brassicaformis/Vitrella_brassicaformis_igenic_probs.pbl
augustus/config/species/Vitrella_brassicaformis/Vitrella_brassicaformis_intron_probs.pbl
augustus/config/species/Vitrella_brassicaformis/Vitrella_brassicaformis_metapars.cfg
augustus/config/species/Vitrella_brassicaformis/Vitrella_brassicaformis_metapars.cgp.cfg
augustus/config/species/Vitrella_brassicaformis/Vitrella_brassicaformis_metapars.utr.cfg
augustus/config/species/Vitrella_brassicaformis/Vitrella_brassicaformis_parameters.cfg
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augustus/config/species/Xenopus_tropicalis/Xenopus_tropicalis_exon_probs.pbl
augustus/config/species/Xenopus_tropicalis/Xenopus_tropicalis_igenic_probs.pbl
augustus/config/species/Xenopus_tropicalis/Xenopus_tropicalis_intron_probs.pbl
augustus/config/species/Xenopus_tropicalis/Xenopus_tropicalis_metapars.cfg
augustus/config/species/Xenopus_tropicalis/Xenopus_tropicalis_metapars.cgp.cfg
augustus/config/species/Xenopus_tropicalis/Xenopus_tropicalis_metapars.utr.cfg
augustus/config/species/Xenopus_tropicalis/Xenopus_tropicalis_parameters.cfg
augustus/config/species/Xenopus_tropicalis/Xenopus_tropicalis_weightmatrix.txt
augustus/config/species/Xiphophorus_maculatus/README.txt
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augustus/config/species/Xiphophorus_maculatus/Xiphophorus_maculatus_igenic_probs.pbl
augustus/config/species/Xiphophorus_maculatus/Xiphophorus_maculatus_intron_probs.pbl
augustus/config/species/Xiphophorus_maculatus/Xiphophorus_maculatus_parameters.cfg
augustus/config/species/Xiphophorus_maculatus/Xiphophorus_maculatus_utr_probs.pbl
augustus/config/species/Xiphophorus_maculatus/Xiphophorus_maculatus_weightmatrix.txt
augustus/config/species/Xipophorus_maculatus/Xipophorus_maculatus_exon_probs.pbl
augustus/config/species/Xipophorus_maculatus/Xipophorus_maculatus_igenic_probs.pbl
augustus/config/species/Xipophorus_maculatus/Xipophorus_maculatus_intron_probs.pbl
augustus/config/species/Xipophorus_maculatus/Xipophorus_maculatus_parameters.cfg
augustus/config/species/Xipophorus_maculatus/Xipophorus_maculatus_utr_probs.pbl
augustus/config/species/Xipophorus_maculatus/Xipophorus_maculatus_weightmatrix.txt
augustus/config/species/adorsata/adorsata_parameters.cfg
augustus/config/species/adorsata/adorsata_weightmatrix.txt
augustus/config/species/adorsata/generic_exon_probs.pbl
augustus/config/species/adorsata/generic_igenic_probs.pbl
augustus/config/species/adorsata/generic_intron_probs.pbl
augustus/config/species/adorsata/generic_weightmatrix.txt
augustus/config/species/aedes/aedes_exon_probs.pbl
augustus/config/species/aedes/aedes_igenic_probs.pbl
augustus/config/species/aedes/aedes_intron_probs.pbl
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augustus/config/species/aedes/aedes_weightmatrix.txt
augustus/config/species/amphimedon/amphimedon_exon_probs.pbl
augustus/config/species/amphimedon/amphimedon_igenic_probs.pbl
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augustus/config/species/amphimedon/amphimedon_metapars.cfg
augustus/config/species/amphimedon/amphimedon_parameters.cfg
augustus/config/species/amphimedon/amphimedon_utr_probs.pbl
augustus/config/species/amphimedon/amphimedon_weightmatrix.txt
augustus/config/species/ancylostoma_ceylanicum/README.TXT
augustus/config/species/ancylostoma_ceylanicum/ancylostoma_ceylanicum_exon_probs.pbl
augustus/config/species/ancylostoma_ceylanicum/ancylostoma_ceylanicum_igenic_probs.pbl
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augustus/config/species/ancylostoma_ceylanicum/ancylostoma_ceylanicum_metapars.cfg
augustus/config/species/ancylostoma_ceylanicum/ancylostoma_ceylanicum_metapars.utr.cfg
augustus/config/species/ancylostoma_ceylanicum/ancylostoma_ceylanicum_parameters.cfg
augustus/config/species/ancylostoma_ceylanicum/ancylostoma_ceylanicum_weightmatrix.txt
augustus/config/species/anidulans/anidulans_exon_probs.pbl
augustus/config/species/anidulans/anidulans_igenic_probs.pbl
augustus/config/species/anidulans/anidulans_intron_probs.pbl
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augustus/config/species/anidulans/anidulans_weightmatrix.txt
augustus/config/species/arabidopsis/arabidopsis_exon_probs.pbl
augustus/config/species/arabidopsis/arabidopsis_igenic_probs.pbl
augustus/config/species/arabidopsis/arabidopsis_intron_probs.pbl
augustus/config/species/arabidopsis/arabidopsis_parameters.cfg
augustus/config/species/arabidopsis/arabidopsis_utr_probs.pbl
augustus/config/species/arabidopsis/arabidopsis_weightmatrix.txt
augustus/config/species/aspergillus_fumigatus/aspergillus_fumigatus_exon_probs.pbl
augustus/config/species/aspergillus_fumigatus/aspergillus_fumigatus_igenic_probs.pbl
augustus/config/species/aspergillus_fumigatus/aspergillus_fumigatus_intron_probs.pbl
augustus/config/species/aspergillus_fumigatus/aspergillus_fumigatus_metapars.cfg
augustus/config/species/aspergillus_fumigatus/aspergillus_fumigatus_parameters.cfg
augustus/config/species/aspergillus_fumigatus/aspergillus_fumigatus_weightmatrix.txt
augustus/config/species/aspergillus_nidulans/aspergillus_nidulans_exon_probs.pbl
augustus/config/species/aspergillus_nidulans/aspergillus_nidulans_igenic_probs.pbl
augustus/config/species/aspergillus_nidulans/aspergillus_nidulans_intron_probs.pbl
augustus/config/species/aspergillus_nidulans/aspergillus_nidulans_metapars.cfg
augustus/config/species/aspergillus_nidulans/aspergillus_nidulans_parameters.cfg
augustus/config/species/aspergillus_nidulans/aspergillus_nidulans_weightmatrix.txt
augustus/config/species/aspergillus_oryzae/aspergillus_oryzae_exon_probs.pbl
augustus/config/species/aspergillus_oryzae/aspergillus_oryzae_igenic_probs.pbl
augustus/config/species/aspergillus_oryzae/aspergillus_oryzae_intron_probs.pbl
augustus/config/species/aspergillus_oryzae/aspergillus_oryzae_metapars.cfg
augustus/config/species/aspergillus_oryzae/aspergillus_oryzae_parameters.cfg
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augustus/config/species/aspergillus_terreus/aspergillus_terreus_exon_probs.pbl
augustus/config/species/aspergillus_terreus/aspergillus_terreus_igenic_probs.pbl
augustus/config/species/aspergillus_terreus/aspergillus_terreus_intron_probs.pbl
augustus/config/species/aspergillus_terreus/aspergillus_terreus_metapars.cfg
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augustus/config/species/aspergillus_terreus/aspergillus_terreus_weightmatrix.txt
augustus/config/species/b_pseudomallei/b_pseudomallei_exon_probs.pbl
augustus/config/species/b_pseudomallei/b_pseudomallei_igenic_probs.pbl
augustus/config/species/b_pseudomallei/b_pseudomallei_metapars.cfg
augustus/config/species/b_pseudomallei/b_pseudomallei_metapars.utr.cfg
augustus/config/species/b_pseudomallei/b_pseudomallei_ovlp_len.pbl
augustus/config/species/b_pseudomallei/b_pseudomallei_parameters.cfg
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augustus/config/species/b_pseudomallei/b_pseudomallei_parameters.cfg.orig2
augustus/config/species/b_pseudomallei/b_pseudomallei_trans_shadow_bacterium.pbl
augustus/config/species/b_pseudomallei/b_pseudomallei_weightmatrix.txt
augustus/config/species/bombus_impatiens1/bombus_impatiens1_exon_probs.pbl
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augustus/config/species/bombus_impatiens1/bombus_impatiens1_igenic_probs.pbl
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augustus/config/species/bombus_impatiens1/bombus_impatiens1_intron_probs.pbl
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augustus/config/species/bombus_impatiens1/bombus_impatiens1_metapars.cfg
augustus/config/species/bombus_impatiens1/bombus_impatiens1_metapars.utr.cfg
augustus/config/species/bombus_impatiens1/bombus_impatiens1_parameters.cfg
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augustus/config/species/bombus_impatiens1/bombus_impatiens1_parameters.cfg.orig2
augustus/config/species/bombus_impatiens1/bombus_impatiens1_parameters.cfg.orig3
augustus/config/species/bombus_impatiens1/bombus_impatiens1_parameters.cfg.orig4
augustus/config/species/bombus_impatiens1/bombus_impatiens1_parameters.cfg.orig5
augustus/config/species/bombus_impatiens1/bombus_impatiens1_weightmatrix.txt
augustus/config/species/bombus_terrestris2/bombus_terrestris2_exon_probs.pbl
augustus/config/species/bombus_terrestris2/bombus_terrestris2_exon_probs.pbl.withoutCRF
augustus/config/species/bombus_terrestris2/bombus_terrestris2_igenic_probs.pbl
augustus/config/species/bombus_terrestris2/bombus_terrestris2_igenic_probs.pbl.withoutCRF
augustus/config/species/bombus_terrestris2/bombus_terrestris2_intron_probs.pbl
augustus/config/species/bombus_terrestris2/bombus_terrestris2_intron_probs.pbl.withoutCRF
augustus/config/species/bombus_terrestris2/bombus_terrestris2_metapars.cfg
augustus/config/species/bombus_terrestris2/bombus_terrestris2_metapars.utr.cfg
augustus/config/species/bombus_terrestris2/bombus_terrestris2_parameters.cfg
augustus/config/species/bombus_terrestris2/bombus_terrestris2_parameters.cfg.orig1
augustus/config/species/bombus_terrestris2/bombus_terrestris2_parameters.cfg.orig2
augustus/config/species/bombus_terrestris2/bombus_terrestris2_parameters.cfg.orig3
augustus/config/species/bombus_terrestris2/bombus_terrestris2_parameters.cfg.orig4
augustus/config/species/bombus_terrestris2/bombus_terrestris2_utr_probs.pbl
augustus/config/species/bombus_terrestris2/bombus_terrestris2_weightmatrix.txt
augustus/config/species/botrytis_cinerea/botrytis_cinerea_exon_probs.pbl
augustus/config/species/botrytis_cinerea/botrytis_cinerea_igenic_probs.pbl
augustus/config/species/botrytis_cinerea/botrytis_cinerea_intron_probs.pbl
augustus/config/species/botrytis_cinerea/botrytis_cinerea_metapars.cfg
augustus/config/species/botrytis_cinerea/botrytis_cinerea_parameters.cfg
augustus/config/species/botrytis_cinerea/botrytis_cinerea_weightmatrix.txt
augustus/config/species/brugia/brugia_exon_probs.pbl
augustus/config/species/brugia/brugia_igenic_probs.pbl
augustus/config/species/brugia/brugia_intron_probs.pbl
augustus/config/species/brugia/brugia_parameters.cfg
augustus/config/species/brugia/brugia_splicefile
augustus/config/species/brugia/brugia_weightmatrix.txt
augustus/config/species/c_elegans_trsk/c_elegans_trsk_exon_probs.pbl
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augustus/config/species/c_elegans_trsk/c_elegans_trsk_igenic_probs.pbl
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augustus/config/species/c_elegans_trsk/c_elegans_trsk_intron_probs.pbl
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augustus/config/species/c_elegans_trsk/c_elegans_trsk_metapars.cfg
augustus/config/species/c_elegans_trsk/c_elegans_trsk_metapars.utr.cfg
augustus/config/species/c_elegans_trsk/c_elegans_trsk_parameters.cfg
augustus/config/species/c_elegans_trsk/c_elegans_trsk_utr_probs.pbl
augustus/config/species/c_elegans_trsk/c_elegans_trsk_weightmatrix.txt
augustus/config/species/cacao/cacao_exon_probs.pbl
augustus/config/species/cacao/cacao_igenic_probs.pbl
augustus/config/species/cacao/cacao_intron_probs.pbl
augustus/config/species/cacao/cacao_metapars.cfg
augustus/config/species/cacao/cacao_metapars.utr.cfg
augustus/config/species/cacao/cacao_parameters.cfg
augustus/config/species/cacao/cacao_utr_probs.pbl
augustus/config/species/cacao/cacao_weightmatrix.txt
augustus/config/species/caenorhabditis/caenorhabditis_exon_probs.pbl
augustus/config/species/caenorhabditis/caenorhabditis_igenic_probs.pbl
augustus/config/species/caenorhabditis/caenorhabditis_intron_probs.pbl
augustus/config/species/caenorhabditis/caenorhabditis_metapars.cfg
augustus/config/species/caenorhabditis/caenorhabditis_parameters.cfg
augustus/config/species/caenorhabditis/caenorhabditis_trans_shadow_partial_utr.pbl
augustus/config/species/caenorhabditis/caenorhabditis_utr_probs.pbl
augustus/config/species/caenorhabditis/caenorhabditis_weightmatrix.txt
augustus/config/species/camponotus_floridanus/README.TXT
augustus/config/species/camponotus_floridanus/camponotus_floridanus_exon_probs.pbl
augustus/config/species/camponotus_floridanus/camponotus_floridanus_igenic_probs.pbl
augustus/config/species/camponotus_floridanus/camponotus_floridanus_intron_probs.pbl
augustus/config/species/camponotus_floridanus/camponotus_floridanus_metapars.cfg
augustus/config/species/camponotus_floridanus/camponotus_floridanus_metapars.utr.cfg
augustus/config/species/camponotus_floridanus/camponotus_floridanus_parameters.cfg
augustus/config/species/camponotus_floridanus/camponotus_floridanus_weightmatrix.txt
augustus/config/species/candida_albicans/candida_albicans_exon_probs.pbl
augustus/config/species/candida_albicans/candida_albicans_igenic_probs.pbl
augustus/config/species/candida_albicans/candida_albicans_intron_probs.pbl
augustus/config/species/candida_albicans/candida_albicans_metapars.cfg
augustus/config/species/candida_albicans/candida_albicans_parameters.cfg
augustus/config/species/candida_albicans/candida_albicans_weightmatrix.txt
augustus/config/species/candida_guilliermondii/candida_guilliermondii_exon_probs.pbl
augustus/config/species/candida_guilliermondii/candida_guilliermondii_igenic_probs.pbl
augustus/config/species/candida_guilliermondii/candida_guilliermondii_intron_probs.pbl
augustus/config/species/candida_guilliermondii/candida_guilliermondii_metapars.cfg
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augustus/config/species/candida_guilliermondii/candida_guilliermondii_weightmatrix.txt
augustus/config/species/candida_tropicalis/candida_tropicalis_exon_probs.pbl
augustus/config/species/candida_tropicalis/candida_tropicalis_igenic_probs.pbl
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augustus/config/species/candida_tropicalis/candida_tropicalis_metapars.cfg
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augustus/config/species/chaetomium_globosum/chaetomium_globosum_exon_probs.pbl
augustus/config/species/chaetomium_globosum/chaetomium_globosum_igenic_probs.pbl
augustus/config/species/chaetomium_globosum/chaetomium_globosum_intron_probs.pbl
augustus/config/species/chaetomium_globosum/chaetomium_globosum_metapars.cfg
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augustus/config/species/chaetomium_globosum/chaetomium_globosum_weightmatrix.txt
augustus/config/species/chicken/README.TXT
augustus/config/species/chicken/chicken_exon_probs.pbl
augustus/config/species/chicken/chicken_igenic_probs.pbl
augustus/config/species/chicken/chicken_intron_probs.pbl
augustus/config/species/chicken/chicken_metapars.cfg
augustus/config/species/chicken/chicken_metapars.utr.cfg
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augustus/config/species/chiloscyllium/chiloscyllium_exon_probs.pbl
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augustus/config/species/chiloscyllium/chiloscyllium_metapars.cgp.cfg
augustus/config/species/chiloscyllium/chiloscyllium_metapars.utr.cfg
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augustus/config/species/chlamy2011/chlamy2011_exon_probs.pbl
augustus/config/species/chlamy2011/chlamy2011_igenic_probs.pbl
augustus/config/species/chlamy2011/chlamy2011_intron_probs.pbl
augustus/config/species/chlamy2011/chlamy2011_metapars.cfg
augustus/config/species/chlamy2011/chlamy2011_metapars.utr.cfg
augustus/config/species/chlamy2011/chlamy2011_parameters.cfg
augustus/config/species/chlamy2011/chlamy2011_trans_shadow_partial.pbl
augustus/config/species/chlamy2011/chlamy2011_trans_shadow_partial_utr.pbl
augustus/config/species/chlamy2011/chlamy2011_utr_probs.pbl
augustus/config/species/chlamy2011/chlamy2011_weightmatrix.txt
augustus/config/species/chlamydomonas/chlamydomonas_exon_probs.pbl
augustus/config/species/chlamydomonas/chlamydomonas_igenic_probs.pbl
augustus/config/species/chlamydomonas/chlamydomonas_intron_probs.pbl
augustus/config/species/chlamydomonas/chlamydomonas_metapars.cfg
augustus/config/species/chlamydomonas/chlamydomonas_parameters.cfg
augustus/config/species/chlamydomonas/chlamydomonas_trans_shadow_partial.pbl
augustus/config/species/chlamydomonas/chlamydomonas_trans_shadow_partial_utr.pbl
augustus/config/species/chlamydomonas/chlamydomonas_utr_probs.pbl
augustus/config/species/chlamydomonas/chlamydomonas_weightmatrix.txt
augustus/config/species/chlorella/chlorella_exon_probs.pbl
augustus/config/species/chlorella/chlorella_igenic_probs.pbl
augustus/config/species/chlorella/chlorella_intron_probs.pbl
augustus/config/species/chlorella/chlorella_metapars.cfg
augustus/config/species/chlorella/chlorella_metapars.utr.cfg
augustus/config/species/chlorella/chlorella_parameters.cfg
augustus/config/species/chlorella/chlorella_utr_probs.pbl
augustus/config/species/chlorella/chlorella_weightmatrix.txt
augustus/config/species/ciona/README.TXT
augustus/config/species/ciona/ciona_exon_probs.pbl
augustus/config/species/ciona/ciona_igenic_probs.pbl
augustus/config/species/ciona/ciona_intron_probs.pbl
augustus/config/species/ciona/ciona_metapars.cfg
augustus/config/species/ciona/ciona_metapars.cgp.cfg
augustus/config/species/ciona/ciona_metapars.utr.cfg
augustus/config/species/ciona/ciona_parameters.cfg
augustus/config/species/ciona/ciona_parameters.cfg.orig1
augustus/config/species/ciona/ciona_weightmatrix.txt
augustus/config/species/coccidioides_immitis/coccidioides_immitis_exon_probs.pbl
augustus/config/species/coccidioides_immitis/coccidioides_immitis_igenic_probs.pbl
augustus/config/species/coccidioides_immitis/coccidioides_immitis_intron_probs.pbl
augustus/config/species/coccidioides_immitis/coccidioides_immitis_metapars.cfg
augustus/config/species/coccidioides_immitis/coccidioides_immitis_parameters.cfg
augustus/config/species/coccidioides_immitis/coccidioides_immitis_weightmatrix.txt
augustus/config/species/coprinus/coprinus_exon_probs.pbl
augustus/config/species/coprinus/coprinus_igenic_probs.pbl
augustus/config/species/coprinus/coprinus_intron_probs.pbl
augustus/config/species/coprinus/coprinus_parameters.cfg
augustus/config/species/coprinus/coprinus_weightmatrix.txt
augustus/config/species/coprinus_cinereus/coprinus_cinereus_exon_probs.pbl
augustus/config/species/coprinus_cinereus/coprinus_cinereus_igenic_probs.pbl
augustus/config/species/coprinus_cinereus/coprinus_cinereus_intron_probs.pbl
augustus/config/species/coprinus_cinereus/coprinus_cinereus_metapars.cfg
augustus/config/species/coprinus_cinereus/coprinus_cinereus_parameters.cfg
augustus/config/species/coprinus_cinereus/coprinus_cinereus_weightmatrix.txt
augustus/config/species/coyote_tobacco/coyote_tobacco_exon_probs.pbl
augustus/config/species/coyote_tobacco/coyote_tobacco_igenic_probs.pbl
augustus/config/species/coyote_tobacco/coyote_tobacco_intron_probs.pbl
augustus/config/species/coyote_tobacco/coyote_tobacco_metapars.cfg
augustus/config/species/coyote_tobacco/coyote_tobacco_metapars.utr.cfg
augustus/config/species/coyote_tobacco/coyote_tobacco_parameters.cfg
augustus/config/species/coyote_tobacco/coyote_tobacco_trans_shadow_partial_utr.pbl
augustus/config/species/coyote_tobacco/coyote_tobacco_utr_probs.pbl
augustus/config/species/coyote_tobacco/coyote_tobacco_weightmatrix.txt
augustus/config/species/cryptococcus/cryptococcus_exon_probs.pbl
augustus/config/species/cryptococcus/cryptococcus_igenic_probs.pbl
augustus/config/species/cryptococcus/cryptococcus_intron_probs.pbl
augustus/config/species/cryptococcus/cryptococcus_parameters.cfg
augustus/config/species/cryptococcus/cryptococcus_weightmatrix.txt
augustus/config/species/cryptococcus_neoformans_gattii/cryptococcus_neoformans_gattii_exon_probs.pbl
augustus/config/species/cryptococcus_neoformans_gattii/cryptococcus_neoformans_gattii_igenic_probs.pbl
augustus/config/species/cryptococcus_neoformans_gattii/cryptococcus_neoformans_gattii_intron_probs.pbl
augustus/config/species/cryptococcus_neoformans_gattii/cryptococcus_neoformans_gattii_metapars.cfg
augustus/config/species/cryptococcus_neoformans_gattii/cryptococcus_neoformans_gattii_parameters.cfg
augustus/config/species/cryptococcus_neoformans_gattii/cryptococcus_neoformans_gattii_weightmatrix.txt
augustus/config/species/cryptococcus_neoformans_neoformans_B/cryptococcus_neoformans_neoformans_B_exon_probs.pbl
augustus/config/species/cryptococcus_neoformans_neoformans_B/cryptococcus_neoformans_neoformans_B_igenic_probs.pbl
augustus/config/species/cryptococcus_neoformans_neoformans_B/cryptococcus_neoformans_neoformans_B_intron_probs.pbl
augustus/config/species/cryptococcus_neoformans_neoformans_B/cryptococcus_neoformans_neoformans_B_metapars.cfg
augustus/config/species/cryptococcus_neoformans_neoformans_B/cryptococcus_neoformans_neoformans_B_parameters.cfg
augustus/config/species/cryptococcus_neoformans_neoformans_B/cryptococcus_neoformans_neoformans_B_weightmatrix.txt
augustus/config/species/cryptococcus_neoformans_neoformans_JEC21/cryptococcus_neoformans_neoformans_JEC21_exon_probs.pbl
augustus/config/species/cryptococcus_neoformans_neoformans_JEC21/cryptococcus_neoformans_neoformans_JEC21_igenic_probs.pbl
augustus/config/species/cryptococcus_neoformans_neoformans_JEC21/cryptococcus_neoformans_neoformans_JEC21_intron_probs.pbl
augustus/config/species/cryptococcus_neoformans_neoformans_JEC21/cryptococcus_neoformans_neoformans_JEC21_metapars.cfg
augustus/config/species/cryptococcus_neoformans_neoformans_JEC21/cryptococcus_neoformans_neoformans_JEC21_parameters.cfg
augustus/config/species/cryptococcus_neoformans_neoformans_JEC21/cryptococcus_neoformans_neoformans_JEC21_weightmatrix.txt
augustus/config/species/culex/culex_exon_probs.pbl
augustus/config/species/culex/culex_exon_probs.pbl.wech
augustus/config/species/culex/culex_igenic_probs.pbl
augustus/config/species/culex/culex_igenic_probs.pbl.wech
augustus/config/species/culex/culex_intron_probs.pbl
augustus/config/species/culex/culex_intron_probs.pbl.wech
augustus/config/species/culex/culex_metapars.cfg
augustus/config/species/culex/culex_parameters.cfg
augustus/config/species/culex/culex_parameters.old.cfg
augustus/config/species/culex/culex_trans_shadow_partial_utr.pbl
augustus/config/species/culex/culex_utr_probs.pbl
augustus/config/species/culex/culex_weightmatrix.txt
augustus/config/species/debaryomyces_hansenii/debaryomyces_hansenii_exon_probs.pbl
augustus/config/species/debaryomyces_hansenii/debaryomyces_hansenii_igenic_probs.pbl
augustus/config/species/debaryomyces_hansenii/debaryomyces_hansenii_intron_probs.pbl
augustus/config/species/debaryomyces_hansenii/debaryomyces_hansenii_metapars.cfg
augustus/config/species/debaryomyces_hansenii/debaryomyces_hansenii_parameters.cfg
augustus/config/species/debaryomyces_hansenii/debaryomyces_hansenii_weightmatrix.txt
augustus/config/species/elephant_shark/elephant_shark_exon_probs.pbl
augustus/config/species/elephant_shark/elephant_shark_igenic_probs.pbl
augustus/config/species/elephant_shark/elephant_shark_intron_probs.pbl
augustus/config/species/elephant_shark/elephant_shark_metapars.cfg
augustus/config/species/elephant_shark/elephant_shark_metapars.utr.cfg
augustus/config/species/elephant_shark/elephant_shark_parameters.cfg
augustus/config/species/elephant_shark/elephant_shark_weightmatrix.txt
augustus/config/species/encephalitozoon_cuniculi_GB/encephalitozoon_cuniculi_GB_exon_probs.pbl
augustus/config/species/encephalitozoon_cuniculi_GB/encephalitozoon_cuniculi_GB_igenic_probs.pbl
augustus/config/species/encephalitozoon_cuniculi_GB/encephalitozoon_cuniculi_GB_intron_probs.pbl
augustus/config/species/encephalitozoon_cuniculi_GB/encephalitozoon_cuniculi_GB_metapars.cfg
augustus/config/species/encephalitozoon_cuniculi_GB/encephalitozoon_cuniculi_GB_parameters.cfg
augustus/config/species/encephalitozoon_cuniculi_GB/encephalitozoon_cuniculi_GB_weightmatrix.txt
augustus/config/species/eremothecium_gossypii/eremothecium_gossypii_exon_probs.pbl
augustus/config/species/eremothecium_gossypii/eremothecium_gossypii_igenic_probs.pbl
augustus/config/species/eremothecium_gossypii/eremothecium_gossypii_intron_probs.pbl
augustus/config/species/eremothecium_gossypii/eremothecium_gossypii_metapars.cfg
augustus/config/species/eremothecium_gossypii/eremothecium_gossypii_parameters.cfg
augustus/config/species/eremothecium_gossypii/eremothecium_gossypii_weightmatrix.txt
augustus/config/species/fly/fly_exon_probs.pbl
augustus/config/species/fly/fly_igenic_probs.pbl
augustus/config/species/fly/fly_intron_probs.pbl
augustus/config/species/fly/fly_metapars.cfg
augustus/config/species/fly/fly_metapars.utr.cfg
augustus/config/species/fly/fly_parameters.cfg
augustus/config/species/fly/fly_utr_probs.pbl
augustus/config/species/fly/fly_weightmatrix.txt
augustus/config/species/fly_exp/fly_exp_exon_probs.pbl
augustus/config/species/fly_exp/fly_exp_igenic_probs.pbl
augustus/config/species/fly_exp/fly_exp_intron_probs.pbl
augustus/config/species/fly_exp/fly_exp_metapars.cfg
augustus/config/species/fly_exp/fly_exp_metapars.utr.cfg
augustus/config/species/fly_exp/fly_exp_parameters.cfg
augustus/config/species/fly_exp/fly_exp_utr_probs.pbl
augustus/config/species/fly_exp/fly_exp_weightmatrix.txt
augustus/config/species/fusarium/fusarium_exon_probs.pbl
augustus/config/species/fusarium/fusarium_igenic_probs.pbl
augustus/config/species/fusarium/fusarium_intron_probs.pbl
augustus/config/species/fusarium/fusarium_parameters.cfg
augustus/config/species/fusarium/fusarium_weightmatrix.txt
augustus/config/species/fusarium_graminearum/fusarium_graminearum_exon_probs.pbl
augustus/config/species/fusarium_graminearum/fusarium_graminearum_igenic_probs.pbl
augustus/config/species/fusarium_graminearum/fusarium_graminearum_intron_probs.pbl
augustus/config/species/fusarium_graminearum/fusarium_graminearum_metapars.cfg
augustus/config/species/fusarium_graminearum/fusarium_graminearum_parameters.cfg
augustus/config/species/fusarium_graminearum/fusarium_graminearum_weightmatrix.txt
augustus/config/species/galdieria/extrinsic.PE.cfg
augustus/config/species/galdieria/galdieria_exon_probs.pbl
augustus/config/species/galdieria/galdieria_igenic_probs.pbl
augustus/config/species/galdieria/galdieria_intron_probs.pbl
augustus/config/species/galdieria/galdieria_metapars.cfg
augustus/config/species/galdieria/galdieria_parameters.cfg
augustus/config/species/galdieria/galdieria_splicefile
augustus/config/species/galdieria/galdieria_trans_shadow_partial_utr.pbl
augustus/config/species/galdieria/galdieria_utr_probs.pbl
augustus/config/species/galdieria/galdieria_weightmatrix.txt
augustus/config/species/generic/generic_metapars.cfg
augustus/config/species/generic/generic_metapars.cgp.cfg
augustus/config/species/generic/generic_metapars.utr.cfg
augustus/config/species/generic/generic_parameters.cfg
augustus/config/species/generic/generic_weightmatrix.txt
augustus/config/species/gigaspora_margarita/README.TXT
augustus/config/species/gigaspora_margarita/gigaspora_margarita_exon_probs.pbl
augustus/config/species/gigaspora_margarita/gigaspora_margarita_igenic_probs.pbl
augustus/config/species/gigaspora_margarita/gigaspora_margarita_intron_probs.pbl
augustus/config/species/gigaspora_margarita/gigaspora_margarita_metapars.cfg
augustus/config/species/gigaspora_margarita/gigaspora_margarita_metapars.cgp.cfg
augustus/config/species/gigaspora_margarita/gigaspora_margarita_metapars.utr.cfg
augustus/config/species/gigaspora_margarita/gigaspora_margarita_parameters.cfg
augustus/config/species/gigaspora_margarita/gigaspora_margarita_weightmatrix.txt
augustus/config/species/gigaspora_margarita/gth.cfg
augustus/config/species/heliconius_melpomene1/heliconius_melpomene1_exon_probs.pbl
augustus/config/species/heliconius_melpomene1/heliconius_melpomene1_igenic_probs.pbl
augustus/config/species/heliconius_melpomene1/heliconius_melpomene1_intron_probs.pbl
augustus/config/species/heliconius_melpomene1/heliconius_melpomene1_metapars.cfg
augustus/config/species/heliconius_melpomene1/heliconius_melpomene1_metapars.utr.cfg
augustus/config/species/heliconius_melpomene1/heliconius_melpomene1_parameters.cfg
augustus/config/species/heliconius_melpomene1/heliconius_melpomene1_weightmatrix.txt
augustus/config/species/histoplasma/histoplasma_exon_probs.pbl
augustus/config/species/histoplasma/histoplasma_igenic_probs.pbl
augustus/config/species/histoplasma/histoplasma_intron_probs.pbl
augustus/config/species/histoplasma/histoplasma_parameters.cfg
augustus/config/species/histoplasma/histoplasma_weightmatrix.txt
augustus/config/species/histoplasma_capsulatum/histoplasma_capsulatum_exon_probs.pbl
augustus/config/species/histoplasma_capsulatum/histoplasma_capsulatum_igenic_probs.pbl
augustus/config/species/histoplasma_capsulatum/histoplasma_capsulatum_intron_probs.pbl
augustus/config/species/histoplasma_capsulatum/histoplasma_capsulatum_metapars.cfg
augustus/config/species/histoplasma_capsulatum/histoplasma_capsulatum_parameters.cfg
augustus/config/species/histoplasma_capsulatum/histoplasma_capsulatum_weightmatrix.txt
augustus/config/species/honeybee1/honeybee1_exon_probs.pbl
augustus/config/species/honeybee1/honeybee1_exon_probs.pbl.withoutCRF
augustus/config/species/honeybee1/honeybee1_igenic_probs.pbl
augustus/config/species/honeybee1/honeybee1_igenic_probs.pbl.withoutCRF
augustus/config/species/honeybee1/honeybee1_intron_probs.pbl
augustus/config/species/honeybee1/honeybee1_intron_probs.pbl.withoutCRF
augustus/config/species/honeybee1/honeybee1_metapars.cfg
augustus/config/species/honeybee1/honeybee1_metapars.utr.cfg
augustus/config/species/honeybee1/honeybee1_parameters.cfg
augustus/config/species/honeybee1/honeybee1_parameters.cfg.orig1
augustus/config/species/honeybee1/honeybee1_utr_probs.pbl
augustus/config/species/honeybee1/honeybee1_weightmatrix.txt
augustus/config/species/human/README.TXT
augustus/config/species/human/human_exon_probs.pbl
augustus/config/species/human/human_igenic_probs.pbl
augustus/config/species/human/human_intron_probs.pbl
augustus/config/species/human/human_parameters.cfg
augustus/config/species/human/human_trans_shadow_partial_utr.pbl
augustus/config/species/human/human_utr_probs.pbl
augustus/config/species/human/human_weightmatrix.txt
augustus/config/species/hymenolepis_microstoma/hymenolepis_microstoma_exon_probs.pbl
augustus/config/species/hymenolepis_microstoma/hymenolepis_microstoma_igenic_probs.pbl
augustus/config/species/hymenolepis_microstoma/hymenolepis_microstoma_intron_probs.pbl
augustus/config/species/hymenolepis_microstoma/hymenolepis_microstoma_metapars.cfg
augustus/config/species/hymenolepis_microstoma/hymenolepis_microstoma_metapars.cgp.cfg
augustus/config/species/hymenolepis_microstoma/hymenolepis_microstoma_metapars.utr.cfg
augustus/config/species/hymenolepis_microstoma/hymenolepis_microstoma_parameters.cfg
augustus/config/species/hymenolepis_microstoma/hymenolepis_microstoma_weightmatrix.txt
augustus/config/species/hymenolepis_microstoma/make.doc
augustus/config/species/japaneselamprey/japaneselamprey_exon_probs.pbl
augustus/config/species/japaneselamprey/japaneselamprey_igenic_probs.pbl
augustus/config/species/japaneselamprey/japaneselamprey_intron_probs.pbl
augustus/config/species/japaneselamprey/japaneselamprey_metapars.cfg
augustus/config/species/japaneselamprey/japaneselamprey_metapars.utr.cfg
augustus/config/species/japaneselamprey/japaneselamprey_parameters.cfg
augustus/config/species/japaneselamprey/japaneselamprey_weightmatrix.txt
augustus/config/species/kluyveromyces_lactis/kluyveromyces_lactis_exon_probs.pbl
augustus/config/species/kluyveromyces_lactis/kluyveromyces_lactis_igenic_probs.pbl
augustus/config/species/kluyveromyces_lactis/kluyveromyces_lactis_intron_probs.pbl
augustus/config/species/kluyveromyces_lactis/kluyveromyces_lactis_metapars.cfg
augustus/config/species/kluyveromyces_lactis/kluyveromyces_lactis_parameters.cfg
augustus/config/species/kluyveromyces_lactis/kluyveromyces_lactis_weightmatrix.txt
augustus/config/species/laccaria_bicolor/laccaria_bicolor_exon_probs.pbl
augustus/config/species/laccaria_bicolor/laccaria_bicolor_igenic_probs.pbl
augustus/config/species/laccaria_bicolor/laccaria_bicolor_intron_probs.pbl
augustus/config/species/laccaria_bicolor/laccaria_bicolor_metapars.cfg
augustus/config/species/laccaria_bicolor/laccaria_bicolor_parameters.cfg
augustus/config/species/laccaria_bicolor/laccaria_bicolor_weightmatrix.txt
augustus/config/species/leishmania_tarentolae/leishmania_tarentolae_exon_probs.pbl
augustus/config/species/leishmania_tarentolae/leishmania_tarentolae_igenic_probs.pbl
augustus/config/species/leishmania_tarentolae/leishmania_tarentolae_metapars.cfg
augustus/config/species/leishmania_tarentolae/leishmania_tarentolae_metapars.utr.cfg
augustus/config/species/leishmania_tarentolae/leishmania_tarentolae_parameters.cfg
augustus/config/species/leishmania_tarentolae/leishmania_tarentolae_weightmatrix.txt
augustus/config/species/lodderomyces_elongisporus/lodderomyces_elongisporus_exon_probs.pbl
augustus/config/species/lodderomyces_elongisporus/lodderomyces_elongisporus_igenic_probs.pbl
augustus/config/species/lodderomyces_elongisporus/lodderomyces_elongisporus_intron_probs.pbl
augustus/config/species/lodderomyces_elongisporus/lodderomyces_elongisporus_metapars.cfg
augustus/config/species/lodderomyces_elongisporus/lodderomyces_elongisporus_parameters.cfg
augustus/config/species/lodderomyces_elongisporus/lodderomyces_elongisporus_weightmatrix.txt
augustus/config/species/magnaporthe_grisea/magnaporthe_grisea_exon_probs.pbl
augustus/config/species/magnaporthe_grisea/magnaporthe_grisea_igenic_probs.pbl
augustus/config/species/magnaporthe_grisea/magnaporthe_grisea_intron_probs.pbl
augustus/config/species/magnaporthe_grisea/magnaporthe_grisea_metapars.cfg
augustus/config/species/magnaporthe_grisea/magnaporthe_grisea_parameters.cfg
augustus/config/species/magnaporthe_grisea/magnaporthe_grisea_weightmatrix.txt
augustus/config/species/maize/maize_exon_probs.pbl
augustus/config/species/maize/maize_igenic_probs.pbl
augustus/config/species/maize/maize_intron_probs.pbl
augustus/config/species/maize/maize_metapars.cfg
augustus/config/species/maize/maize_parameters.cfg
augustus/config/species/maize/maize_splicefile.txt.gz
augustus/config/species/maize/maize_weightmatrix.txt
augustus/config/species/maize5/maize5_exon_probs.pbl
augustus/config/species/maize5/maize5_igenic_probs.pbl
augustus/config/species/maize5/maize5_intron_probs.pbl
augustus/config/species/maize5/maize5_metapars.cfg
augustus/config/species/maize5/maize5_metapars.utr.cfg
augustus/config/species/maize5/maize5_parameters.cfg
augustus/config/species/maize5/maize5_utr_probs.pbl
augustus/config/species/maize5/maize5_weightmatrix.txt
augustus/config/species/mnemiopsis_leidyi/README.TXT
augustus/config/species/mnemiopsis_leidyi/mnemiopsis_leidyi_exon_probs.pbl
augustus/config/species/mnemiopsis_leidyi/mnemiopsis_leidyi_igenic_probs.pbl
augustus/config/species/mnemiopsis_leidyi/mnemiopsis_leidyi_intron_probs.pbl
augustus/config/species/mnemiopsis_leidyi/mnemiopsis_leidyi_metapars.cfg
augustus/config/species/mnemiopsis_leidyi/mnemiopsis_leidyi_metapars.cgp.cfg
augustus/config/species/mnemiopsis_leidyi/mnemiopsis_leidyi_metapars.utr.cfg
augustus/config/species/mnemiopsis_leidyi/mnemiopsis_leidyi_parameters.cfg
augustus/config/species/mnemiopsis_leidyi/mnemiopsis_leidyi_parameters.cgp.cfg
augustus/config/species/mnemiopsis_leidyi/mnemiopsis_leidyi_utr_probs.pbl
augustus/config/species/mnemiopsis_leidyi/mnemiopsis_leidyi_weightmatrix.txt
augustus/config/species/nasonia/nasonia_exon_probs.pbl
augustus/config/species/nasonia/nasonia_igenic_probs.pbl
augustus/config/species/nasonia/nasonia_intron_probs.pbl
augustus/config/species/nasonia/nasonia_metapars.cfg
augustus/config/species/nasonia/nasonia_parameters.cfg
augustus/config/species/nasonia/nasonia_weightmatrix.txt
augustus/config/species/nematostella_vectensis/README.TXT
augustus/config/species/nematostella_vectensis/nematostella_vectensis_exon_probs.pbl
augustus/config/species/nematostella_vectensis/nematostella_vectensis_igenic_probs.pbl
augustus/config/species/nematostella_vectensis/nematostella_vectensis_intron_probs.pbl
augustus/config/species/nematostella_vectensis/nematostella_vectensis_parameters.cfg
augustus/config/species/nematostella_vectensis/nematostella_vectensis_weightmatrix.txt
augustus/config/species/neurospora/neurospora_exon_probs.pbl
augustus/config/species/neurospora/neurospora_igenic_probs.pbl
augustus/config/species/neurospora/neurospora_intron_probs.pbl
augustus/config/species/neurospora/neurospora_parameters.cfg
augustus/config/species/neurospora/neurospora_weightmatrix.txt
augustus/config/species/neurospora_crassa/neurospora_crassa_exon_probs.pbl
augustus/config/species/neurospora_crassa/neurospora_crassa_igenic_probs.pbl
augustus/config/species/neurospora_crassa/neurospora_crassa_intron_probs.pbl
augustus/config/species/neurospora_crassa/neurospora_crassa_metapars.cfg
augustus/config/species/neurospora_crassa/neurospora_crassa_parameters.cfg
augustus/config/species/neurospora_crassa/neurospora_crassa_weightmatrix.txt
augustus/config/species/parasteatoda/parasteatoda_exon_probs.pbl
augustus/config/species/parasteatoda/parasteatoda_igenic_probs.pbl
augustus/config/species/parasteatoda/parasteatoda_intron_probs.pbl
augustus/config/species/parasteatoda/parasteatoda_parameters.cfg
augustus/config/species/parasteatoda/parasteatoda_utr_probs.pbl
augustus/config/species/parasteatoda/parasteatoda_weightmatrix.txt
augustus/config/species/pchrysosporium/pchrysosporium_exon_probs.pbl
augustus/config/species/pchrysosporium/pchrysosporium_igenic_probs.pbl
augustus/config/species/pchrysosporium/pchrysosporium_intron_probs.pbl
augustus/config/species/pchrysosporium/pchrysosporium_parameters.cfg
augustus/config/species/pchrysosporium/pchrysosporium_weightmatrix.txt
augustus/config/species/pea_aphid/pea_aphid_exon_probs.pbl
augustus/config/species/pea_aphid/pea_aphid_igenic_probs.pbl
augustus/config/species/pea_aphid/pea_aphid_intron_probs.pbl
augustus/config/species/pea_aphid/pea_aphid_metapars.cfg
augustus/config/species/pea_aphid/pea_aphid_parameters.cfg
augustus/config/species/pea_aphid/pea_aphid_trans_shadow_partial_utr.pbl
augustus/config/species/pea_aphid/pea_aphid_utr_probs.pbl
augustus/config/species/pea_aphid/pea_aphid_weightmatrix.txt
augustus/config/species/pfalciparum/pfalciparum_exon_probs.pbl
augustus/config/species/pfalciparum/pfalciparum_igenic_probs.pbl
augustus/config/species/pfalciparum/pfalciparum_intron_probs.pbl
augustus/config/species/pfalciparum/pfalciparum_metapars.cfg
augustus/config/species/pfalciparum/pfalciparum_parameters.cfg
augustus/config/species/pfalciparum/pfalciparum_trans_shadow_partial.pbl
augustus/config/species/pfalciparum/pfalciparum_weightmatrix.txt
augustus/config/species/phanerochaete_chrysosporium/phanerochaete_chrysosporium_exon_probs.pbl
augustus/config/species/phanerochaete_chrysosporium/phanerochaete_chrysosporium_igenic_probs.pbl
augustus/config/species/phanerochaete_chrysosporium/phanerochaete_chrysosporium_intron_probs.pbl
augustus/config/species/phanerochaete_chrysosporium/phanerochaete_chrysosporium_metapars.cfg
augustus/config/species/phanerochaete_chrysosporium/phanerochaete_chrysosporium_parameters.cfg
augustus/config/species/phanerochaete_chrysosporium/phanerochaete_chrysosporium_weightmatrix.txt
augustus/config/species/pichia_stipitis/pichia_stipitis_exon_probs.pbl
augustus/config/species/pichia_stipitis/pichia_stipitis_igenic_probs.pbl
augustus/config/species/pichia_stipitis/pichia_stipitis_intron_probs.pbl
augustus/config/species/pichia_stipitis/pichia_stipitis_metapars.cfg
augustus/config/species/pichia_stipitis/pichia_stipitis_parameters.cfg
augustus/config/species/pichia_stipitis/pichia_stipitis_weightmatrix.txt
augustus/config/species/pisaster/extrinsic.pisaster.cfg
augustus/config/species/pisaster/pisaster_exon_probs.pbl
augustus/config/species/pisaster/pisaster_igenic_probs.pbl
augustus/config/species/pisaster/pisaster_intron_probs.pbl
augustus/config/species/pisaster/pisaster_metapars.cfg
augustus/config/species/pisaster/pisaster_metapars.cgp.cfg
augustus/config/species/pisaster/pisaster_metapars.utr.cfg
augustus/config/species/pisaster/pisaster_parameters.cfg
augustus/config/species/pisaster/pisaster_weightmatrix.txt
augustus/config/species/pneumocystis/README.TXT
augustus/config/species/pneumocystis/pneumocystis_exon_probs.pbl
augustus/config/species/pneumocystis/pneumocystis_igenic_probs.pbl
augustus/config/species/pneumocystis/pneumocystis_intron_probs.pbl
augustus/config/species/pneumocystis/pneumocystis_metapars.cfg
augustus/config/species/pneumocystis/pneumocystis_metaparsBAK.cfg
augustus/config/species/pneumocystis/pneumocystis_parameters.cfg
augustus/config/species/pneumocystis/pneumocystis_weightmatrix.txt
augustus/config/species/rhincodon/rhincodon_exon_probs.pbl
augustus/config/species/rhincodon/rhincodon_igenic_probs.pbl
augustus/config/species/rhincodon/rhincodon_intron_probs.pbl
augustus/config/species/rhincodon/rhincodon_metapars.cfg
augustus/config/species/rhincodon/rhincodon_metapars.cgp.cfg
augustus/config/species/rhincodon/rhincodon_metapars.utr.cfg
augustus/config/species/rhincodon/rhincodon_parameters.cfg
augustus/config/species/rhincodon/rhincodon_parameters.cfg.orig1
augustus/config/species/rhincodon/rhincodon_weightmatrix.txt
augustus/config/species/rhizopus_oryzae/rhizopus_oryzae_exon_probs.pbl
augustus/config/species/rhizopus_oryzae/rhizopus_oryzae_igenic_probs.pbl
augustus/config/species/rhizopus_oryzae/rhizopus_oryzae_intron_probs.pbl
augustus/config/species/rhizopus_oryzae/rhizopus_oryzae_metapars.cfg
augustus/config/species/rhizopus_oryzae/rhizopus_oryzae_parameters.cfg
augustus/config/species/rhizopus_oryzae/rhizopus_oryzae_weightmatrix.txt
augustus/config/species/rhodnius/rhodnius_exon_probs.pbl
augustus/config/species/rhodnius/rhodnius_igenic_probs.pbl
augustus/config/species/rhodnius/rhodnius_intron_probs.pbl
augustus/config/species/rhodnius/rhodnius_metapars.cfg
augustus/config/species/rhodnius/rhodnius_metapars.utr.cfg
augustus/config/species/rhodnius/rhodnius_parameters.cfg
augustus/config/species/rhodnius/rhodnius_utr_probs.pbl
augustus/config/species/rhodnius/rhodnius_weightmatrix.txt
augustus/config/species/rice/README.TXT
augustus/config/species/rice/rice_exon_probs.pbl
augustus/config/species/rice/rice_igenic_probs.pbl
augustus/config/species/rice/rice_intron_probs.pbl
augustus/config/species/rice/rice_metapars.cfg
augustus/config/species/rice/rice_metapars.utr.cfg
augustus/config/species/rice/rice_parameters.cfg
augustus/config/species/rice/rice_utr_probs.pbl
augustus/config/species/rice/rice_weightmatrix.txt
augustus/config/species/s_aureus/README.TXT
augustus/config/species/s_aureus/s_aureus_exon_probs.pbl
augustus/config/species/s_aureus/s_aureus_igenic_probs.pbl
augustus/config/species/s_aureus/s_aureus_metapars.cfg
augustus/config/species/s_aureus/s_aureus_metapars.utr.cfg
augustus/config/species/s_aureus/s_aureus_ovlp_len.pbl
augustus/config/species/s_aureus/s_aureus_parameters.cfg
augustus/config/species/s_aureus/s_aureus_parameters.cgp.cfg
augustus/config/species/s_aureus/s_aureus_trans_shadow_bacterium.pbl
augustus/config/species/s_aureus/s_aureus_weightmatrix.txt
augustus/config/species/s_pneumoniae/s_pneumoniae_exon_probs.pbl
augustus/config/species/s_pneumoniae/s_pneumoniae_igenic_probs.pbl
augustus/config/species/s_pneumoniae/s_pneumoniae_metapars.cfg
augustus/config/species/s_pneumoniae/s_pneumoniae_metapars.utr.cfg
augustus/config/species/s_pneumoniae/s_pneumoniae_ovlp_len.pbl
augustus/config/species/s_pneumoniae/s_pneumoniae_parameters.cfg
augustus/config/species/s_pneumoniae/s_pneumoniae_parameters.cfg.orig1
augustus/config/species/s_pneumoniae/s_pneumoniae_parameters.cfg.orig2
augustus/config/species/s_pneumoniae/s_pneumoniae_parameters.cfg.orig3
augustus/config/species/s_pneumoniae/s_pneumoniae_parameters.cfg.orig4
augustus/config/species/s_pneumoniae/s_pneumoniae_trans_shadow_bacterium.pbl
augustus/config/species/s_pneumoniae/s_pneumoniae_weightmatrix.txt
augustus/config/species/saccharomyces/saccharomyces_exon_probs.pbl
augustus/config/species/saccharomyces/saccharomyces_igenic_probs.pbl
augustus/config/species/saccharomyces/saccharomyces_intron_probs.pbl
augustus/config/species/saccharomyces/saccharomyces_parameters.cfg
augustus/config/species/saccharomyces/saccharomyces_weightmatrix.txt
augustus/config/species/saccharomyces_cerevisiae_S288C/saccharomyces_cerevisiae_S288C_exon_probs.pbl
augustus/config/species/saccharomyces_cerevisiae_S288C/saccharomyces_cerevisiae_S288C_igenic_probs.pbl
augustus/config/species/saccharomyces_cerevisiae_S288C/saccharomyces_cerevisiae_S288C_intron_probs.pbl
augustus/config/species/saccharomyces_cerevisiae_S288C/saccharomyces_cerevisiae_S288C_metapars.cfg
augustus/config/species/saccharomyces_cerevisiae_S288C/saccharomyces_cerevisiae_S288C_parameters.cfg
augustus/config/species/saccharomyces_cerevisiae_S288C/saccharomyces_cerevisiae_S288C_weightmatrix.txt
augustus/config/species/saccharomyces_cerevisiae_rm11-1a_1/saccharomyces_cerevisiae_rm11-1a_1_exon_probs.pbl
augustus/config/species/saccharomyces_cerevisiae_rm11-1a_1/saccharomyces_cerevisiae_rm11-1a_1_igenic_probs.pbl
augustus/config/species/saccharomyces_cerevisiae_rm11-1a_1/saccharomyces_cerevisiae_rm11-1a_1_intron_probs.pbl
augustus/config/species/saccharomyces_cerevisiae_rm11-1a_1/saccharomyces_cerevisiae_rm11-1a_1_metapars.cfg
augustus/config/species/saccharomyces_cerevisiae_rm11-1a_1/saccharomyces_cerevisiae_rm11-1a_1_parameters.cfg
augustus/config/species/saccharomyces_cerevisiae_rm11-1a_1/saccharomyces_cerevisiae_rm11-1a_1_weightmatrix.txt
augustus/config/species/schistosoma/schistosoma_exon_probs.pbl
augustus/config/species/schistosoma/schistosoma_igenic_probs.pbl
augustus/config/species/schistosoma/schistosoma_intron_probs.pbl
augustus/config/species/schistosoma/schistosoma_metapars.cfg
augustus/config/species/schistosoma/schistosoma_parameters.cfg
augustus/config/species/schistosoma/schistosoma_parameters.cfg.opt
augustus/config/species/schistosoma/schistosoma_splicefile.txt
augustus/config/species/schistosoma/schistosoma_weightmatrix.txt
augustus/config/species/schistosoma2/README.TXT
augustus/config/species/schistosoma2/schistosoma2_exon_probs.pbl
augustus/config/species/schistosoma2/schistosoma2_igenic_probs.pbl
augustus/config/species/schistosoma2/schistosoma2_intron_probs.pbl
augustus/config/species/schistosoma2/schistosoma2_metapars.cfg
augustus/config/species/schistosoma2/schistosoma2_metapars.cgp.cfg
augustus/config/species/schistosoma2/schistosoma2_metapars.utr.cfg
augustus/config/species/schistosoma2/schistosoma2_parameters.cfg
augustus/config/species/schistosoma2/schistosoma2_utr_probs.pbl
augustus/config/species/schistosoma2/schistosoma2_weightmatrix.txt
augustus/config/species/schizosaccharomyces_pombe/schizosaccharomyces_pombe_exon_probs.pbl
augustus/config/species/schizosaccharomyces_pombe/schizosaccharomyces_pombe_igenic_probs.pbl
augustus/config/species/schizosaccharomyces_pombe/schizosaccharomyces_pombe_intron_probs.pbl
augustus/config/species/schizosaccharomyces_pombe/schizosaccharomyces_pombe_metapars.cfg
augustus/config/species/schizosaccharomyces_pombe/schizosaccharomyces_pombe_parameters.cfg
augustus/config/species/schizosaccharomyces_pombe/schizosaccharomyces_pombe_weightmatrix.txt
augustus/config/species/scyliorhinus/scyliorhinus_exon_probs.pbl
augustus/config/species/scyliorhinus/scyliorhinus_igenic_probs.pbl
augustus/config/species/scyliorhinus/scyliorhinus_intron_probs.pbl
augustus/config/species/scyliorhinus/scyliorhinus_metapars.cfg
augustus/config/species/scyliorhinus/scyliorhinus_metapars.cgp.cfg
augustus/config/species/scyliorhinus/scyliorhinus_metapars.utr.cfg
augustus/config/species/scyliorhinus/scyliorhinus_parameters.cfg
augustus/config/species/scyliorhinus/scyliorhinus_parameters.cfg.orig1
augustus/config/species/scyliorhinus/scyliorhinus_weightmatrix.txt
augustus/config/species/sealamprey/sealamprey_exon_probs.pbl
augustus/config/species/sealamprey/sealamprey_igenic_probs.pbl
augustus/config/species/sealamprey/sealamprey_intron_probs.pbl
augustus/config/species/sealamprey/sealamprey_metapars.cfg
augustus/config/species/sealamprey/sealamprey_parameters.cfg
augustus/config/species/sealamprey/sealamprey_weightmatrix.txt
augustus/config/species/strongylocentrotus_purpuratus/README.TXT
augustus/config/species/strongylocentrotus_purpuratus/strongylocentrotus_purpuratus_exon_probs.pbl
augustus/config/species/strongylocentrotus_purpuratus/strongylocentrotus_purpuratus_igenic_probs.pbl
augustus/config/species/strongylocentrotus_purpuratus/strongylocentrotus_purpuratus_intron_probs.pbl
augustus/config/species/strongylocentrotus_purpuratus/strongylocentrotus_purpuratus_metapars.cfg
augustus/config/species/strongylocentrotus_purpuratus/strongylocentrotus_purpuratus_metapars.cgp.cfg
augustus/config/species/strongylocentrotus_purpuratus/strongylocentrotus_purpuratus_metapars.utr.cfg
augustus/config/species/strongylocentrotus_purpuratus/strongylocentrotus_purpuratus_parameters.cfg
augustus/config/species/strongylocentrotus_purpuratus/strongylocentrotus_purpuratus_parameters.cgp.cfg
augustus/config/species/strongylocentrotus_purpuratus/strongylocentrotus_purpuratus_utr_probs.pbl
augustus/config/species/strongylocentrotus_purpuratus/strongylocentrotus_purpuratus_weightmatrix.txt
augustus/config/species/sulfolobus_solfataricus/sulfolobus_solfataricus_exon_probs.pbl
augustus/config/species/sulfolobus_solfataricus/sulfolobus_solfataricus_igenic_probs.pbl
augustus/config/species/sulfolobus_solfataricus/sulfolobus_solfataricus_metapars.cfg
augustus/config/species/sulfolobus_solfataricus/sulfolobus_solfataricus_metapars.utr.cfg
augustus/config/species/sulfolobus_solfataricus/sulfolobus_solfataricus_ovlp_len.pbl
augustus/config/species/sulfolobus_solfataricus/sulfolobus_solfataricus_parameters.cfg
augustus/config/species/sulfolobus_solfataricus/sulfolobus_solfataricus_trans_shadow_bacterium.pbl
augustus/config/species/sulfolobus_solfataricus/sulfolobus_solfataricus_weightmatrix.txt
augustus/config/species/sunflower/README.TXT
augustus/config/species/sunflower/sunflower_exon_probs.pbl
augustus/config/species/sunflower/sunflower_igenic_probs.pbl
augustus/config/species/sunflower/sunflower_intron_probs.pbl
augustus/config/species/sunflower/sunflower_metapars.cfg
augustus/config/species/sunflower/sunflower_metapars.cgp.cfg
augustus/config/species/sunflower/sunflower_metapars.utr.cfg
augustus/config/species/sunflower/sunflower_parameters.cfg
augustus/config/species/sunflower/sunflower_weightmatrix.txt
augustus/config/species/template_prokaryotic/template_prokaryotic_metapars.cfg
augustus/config/species/template_prokaryotic/template_prokaryotic_metapars.utr.cfg
augustus/config/species/template_prokaryotic/template_prokaryotic_ovlp_len.pbl
augustus/config/species/template_prokaryotic/template_prokaryotic_parameters.cfg
augustus/config/species/template_prokaryotic/template_prokaryotic_trans_shadow_bacterium.pbl
augustus/config/species/template_prokaryotic/template_prokaryotic_weightmatrix.txt
augustus/config/species/tetrahymena/tetrahymena_exon_probs.pbl
augustus/config/species/tetrahymena/tetrahymena_igenic_probs.pbl
augustus/config/species/tetrahymena/tetrahymena_intron_probs.pbl
augustus/config/species/tetrahymena/tetrahymena_metapars.cfg
augustus/config/species/tetrahymena/tetrahymena_parameters.cfg
augustus/config/species/tetrahymena/tetrahymena_weightmatrix.txt
augustus/config/species/thermoanaerobacter_tengcongensis/thermoanaerobacter_tengcongensis_exon_probs.pbl
augustus/config/species/thermoanaerobacter_tengcongensis/thermoanaerobacter_tengcongensis_igenic_probs.pbl
augustus/config/species/thermoanaerobacter_tengcongensis/thermoanaerobacter_tengcongensis_metapars.cfg
augustus/config/species/thermoanaerobacter_tengcongensis/thermoanaerobacter_tengcongensis_metapars.utr.cfg
augustus/config/species/thermoanaerobacter_tengcongensis/thermoanaerobacter_tengcongensis_ovlp_len.pbl
augustus/config/species/thermoanaerobacter_tengcongensis/thermoanaerobacter_tengcongensis_parameters.cfg
augustus/config/species/thermoanaerobacter_tengcongensis/thermoanaerobacter_tengcongensis_trans_shadow_bacterium.pbl
augustus/config/species/thermoanaerobacter_tengcongensis/thermoanaerobacter_tengcongensis_weightmatrix.txt
augustus/config/species/tomato/tomato_exon_probs.pbl
augustus/config/species/tomato/tomato_igenic_probs.pbl
augustus/config/species/tomato/tomato_intron_probs.pbl
augustus/config/species/tomato/tomato_metapars.cfg
augustus/config/species/tomato/tomato_metapars.utr.cfg
augustus/config/species/tomato/tomato_parameters.cfg
augustus/config/species/tomato/tomato_utr_probs.pbl
augustus/config/species/tomato/tomato_weightmatrix.txt
augustus/config/species/toxoplasma/toxoplasma_exon_probs.pbl
augustus/config/species/toxoplasma/toxoplasma_igenic_probs.pbl
augustus/config/species/toxoplasma/toxoplasma_intron_probs.pbl
augustus/config/species/toxoplasma/toxoplasma_metaparameters.cfg
augustus/config/species/toxoplasma/toxoplasma_parameters.cfg
augustus/config/species/toxoplasma/toxoplasma_trans_shadow_partial_utr.pbl
augustus/config/species/toxoplasma/toxoplasma_utr_probs.pbl
augustus/config/species/toxoplasma/toxoplasma_weightmatrix.txt
augustus/config/species/tribolium2012/tribolium2012_exon_probs.pbl
augustus/config/species/tribolium2012/tribolium2012_exon_probs.pbl.HMM
augustus/config/species/tribolium2012/tribolium2012_exon_probs.pbl1
augustus/config/species/tribolium2012/tribolium2012_exon_probs.pbl2
augustus/config/species/tribolium2012/tribolium2012_exon_probs.pbl3
augustus/config/species/tribolium2012/tribolium2012_exon_probs.pbl4
augustus/config/species/tribolium2012/tribolium2012_igenic_probs.pbl
augustus/config/species/tribolium2012/tribolium2012_igenic_probs.pbl.HMM
augustus/config/species/tribolium2012/tribolium2012_igenic_probs.pbl1
augustus/config/species/tribolium2012/tribolium2012_igenic_probs.pbl2
augustus/config/species/tribolium2012/tribolium2012_igenic_probs.pbl3
augustus/config/species/tribolium2012/tribolium2012_igenic_probs.pbl4
augustus/config/species/tribolium2012/tribolium2012_intron_probs.pbl
augustus/config/species/tribolium2012/tribolium2012_intron_probs.pbl.HMM
augustus/config/species/tribolium2012/tribolium2012_intron_probs.pbl1
augustus/config/species/tribolium2012/tribolium2012_intron_probs.pbl2
augustus/config/species/tribolium2012/tribolium2012_intron_probs.pbl3
augustus/config/species/tribolium2012/tribolium2012_intron_probs.pbl4
augustus/config/species/tribolium2012/tribolium2012_metapars.cfg
augustus/config/species/tribolium2012/tribolium2012_metapars.utr.cfg
augustus/config/species/tribolium2012/tribolium2012_parameters.cfg
augustus/config/species/tribolium2012/tribolium2012_parameters.cfg.orig1
augustus/config/species/tribolium2012/tribolium2012_parameters.cfg.orig2
augustus/config/species/tribolium2012/tribolium2012_parameters.cfg.orig3
augustus/config/species/tribolium2012/tribolium2012_parameters.cfg.orig4
augustus/config/species/tribolium2012/tribolium2012_parameters.cfg.orig5
augustus/config/species/tribolium2012/tribolium2012_parameters.cfg.orig6
augustus/config/species/tribolium2012/tribolium2012_parameters.cfg.orig7
augustus/config/species/tribolium2012/tribolium2012_trans_shadow_partial_utr.pbl
augustus/config/species/tribolium2012/tribolium2012_utr_probs.pbl
augustus/config/species/tribolium2012/tribolium2012_utr_probs.pbl.HMM
augustus/config/species/tribolium2012/tribolium2012_weightmatrix.txt
augustus/config/species/trichinella/trichinella_exon_probs.pbl
augustus/config/species/trichinella/trichinella_igenic_probs.pbl
augustus/config/species/trichinella/trichinella_intron_probs.pbl
augustus/config/species/trichinella/trichinella_metapars.cfg
augustus/config/species/trichinella/trichinella_metapars.utr.cfg
augustus/config/species/trichinella/trichinella_parameters.cfg
augustus/config/species/trichinella/trichinella_utr_probs.pbl
augustus/config/species/trichinella/trichinella_weightmatrix.txt
augustus/config/species/ustilago/ustilago_exon_probs.pbl
augustus/config/species/ustilago/ustilago_igenic_probs.pbl
augustus/config/species/ustilago/ustilago_intron_probs.pbl
augustus/config/species/ustilago/ustilago_parameters.cfg
augustus/config/species/ustilago/ustilago_weightmatrix.txt
augustus/config/species/ustilago_maydis/ustilago_maydis_exon_probs.pbl
augustus/config/species/ustilago_maydis/ustilago_maydis_igenic_probs.pbl
augustus/config/species/ustilago_maydis/ustilago_maydis_intron_probs.pbl
augustus/config/species/ustilago_maydis/ustilago_maydis_metapars.cfg
augustus/config/species/ustilago_maydis/ustilago_maydis_parameters.cfg
augustus/config/species/ustilago_maydis/ustilago_maydis_weightmatrix.txt
augustus/config/species/verticillium_albo_atrum1/verticillium_albo_atrum1_exon_probs.pbl
augustus/config/species/verticillium_albo_atrum1/verticillium_albo_atrum1_igenic_probs.pbl
augustus/config/species/verticillium_albo_atrum1/verticillium_albo_atrum1_intron_probs.pbl
augustus/config/species/verticillium_albo_atrum1/verticillium_albo_atrum1_metapars.cfg
augustus/config/species/verticillium_albo_atrum1/verticillium_albo_atrum1_metapars.utr.cfg
augustus/config/species/verticillium_albo_atrum1/verticillium_albo_atrum1_parameters.cfg
augustus/config/species/verticillium_albo_atrum1/verticillium_albo_atrum1_utr_probs.pbl
augustus/config/species/verticillium_albo_atrum1/verticillium_albo_atrum1_weightmatrix.txt
augustus/config/species/verticillium_longisporum1/verticillium_longisporum1_exon_probs.pbl
augustus/config/species/verticillium_longisporum1/verticillium_longisporum1_igenic_probs.pbl
augustus/config/species/verticillium_longisporum1/verticillium_longisporum1_intron_probs.pbl
augustus/config/species/verticillium_longisporum1/verticillium_longisporum1_metapars.cfg
augustus/config/species/verticillium_longisporum1/verticillium_longisporum1_metapars.utr.cfg
augustus/config/species/verticillium_longisporum1/verticillium_longisporum1_parameters.cfg
augustus/config/species/verticillium_longisporum1/verticillium_longisporum1_parameters.cfg.orig1
augustus/config/species/verticillium_longisporum1/verticillium_longisporum1_utr_probs.pbl
augustus/config/species/verticillium_longisporum1/verticillium_longisporum1_weightmatrix.txt
augustus/config/species/volvox/volvox_exon_probs.pbl
augustus/config/species/volvox/volvox_igenic_probs.pbl
augustus/config/species/volvox/volvox_intron_probs.pbl
augustus/config/species/volvox/volvox_metapars.cfg
augustus/config/species/volvox/volvox_metapars.cgp.cfg
augustus/config/species/volvox/volvox_metapars.utr.cfg
augustus/config/species/volvox/volvox_parameters.cfg
augustus/config/species/volvox/volvox_utr_probs.pbl
augustus/config/species/volvox/volvox_weightmatrix.txt
augustus/config/species/wheat/README.txt
augustus/config/species/wheat/wheat_exon_probs.pbl
augustus/config/species/wheat/wheat_igenic_probs.pbl
augustus/config/species/wheat/wheat_intron_probs.pbl
augustus/config/species/wheat/wheat_parameters.cfg
augustus/config/species/wheat/wheat_utr_probs.pbl
augustus/config/species/wheat/wheat_weightmatrix.txt
augustus/config/species/yarrowia_lipolytica/yarrowia_lipolytica_exon_probs.pbl
augustus/config/species/yarrowia_lipolytica/yarrowia_lipolytica_igenic_probs.pbl
augustus/config/species/yarrowia_lipolytica/yarrowia_lipolytica_intron_probs.pbl
augustus/config/species/yarrowia_lipolytica/yarrowia_lipolytica_metapars.cfg
augustus/config/species/yarrowia_lipolytica/yarrowia_lipolytica_metapars.utr.cfg
augustus/config/species/yarrowia_lipolytica/yarrowia_lipolytica_parameters.cfg
augustus/config/species/yarrowia_lipolytica/yarrowia_lipolytica_utr_probs.pbl
augustus/config/species/yarrowia_lipolytica/yarrowia_lipolytica_weightmatrix.txt
augustus/config/species/zebrafish/README.TXT
augustus/config/species/zebrafish/zebrafish_exon_probs.pbl
augustus/config/species/zebrafish/zebrafish_exon_probs.pbl.HMM
augustus/config/species/zebrafish/zebrafish_igenic_probs.pbl
augustus/config/species/zebrafish/zebrafish_igenic_probs.pbl.HMM
augustus/config/species/zebrafish/zebrafish_intron_probs.pbl
augustus/config/species/zebrafish/zebrafish_intron_probs.pbl.HMM
augustus/config/species/zebrafish/zebrafish_metapars.cfg
augustus/config/species/zebrafish/zebrafish_metapars.utr.cfg
augustus/config/species/zebrafish/zebrafish_parameters.cfg
augustus/config/species/zebrafish/zebrafish_weightmatrix.txt
augustus/scripts/PF00225_full.blocks.txt
augustus/scripts/PF00225_seed.blocks.txt
augustus/scripts/README.autoAug
augustus/scripts/SplicedAlignment.pm
augustus/scripts/aa2nonred.pl
augustus/scripts/add_name_to_gff3.pl
augustus/scripts/augustify.py
augustus/scripts/augustus2browser.pl
augustus/scripts/augustus2gbrowse.pl
augustus/scripts/autoAug.pl
augustus/scripts/autoAugPred.pl
augustus/scripts/autoAugTrain.pl
augustus/scripts/bamToWig.py
augustus/scripts/bedgraph2wig.pl
augustus/scripts/blat2gbrowse.pl
augustus/scripts/blat2hints.pl
augustus/scripts/block2prfl.pl
augustus/scripts/cegma2gff.pl
augustus/scripts/checkParamArchive.pl
augustus/scripts/checkUTR
augustus/scripts/cleanDOSfasta.pl
augustus/scripts/clusterAndSplitGenes.pl
augustus/scripts/compare_masking.pl
augustus/scripts/computeFlankingRegion.pl
augustus/scripts/createAugustusJoblist.pl
augustus/scripts/del_from_prfl.pl
augustus/scripts/evalCGP.pl
augustus/scripts/eval_dualdecomp.pl
augustus/scripts/eval_multi_gtf.pl
augustus/scripts/executeTestCGP.py
augustus/scripts/exonerate2hints.pl
augustus/scripts/exoniphyDb2hints.pl
augustus/scripts/extractAnno.py
augustus/scripts/extractTranscriptEnds.pl
augustus/scripts/filter-ppx.pl
augustus/scripts/filterGenes.pl
augustus/scripts/filterGenesIn.pl
augustus/scripts/filterGenesIn_mRNAname.pl
augustus/scripts/filterGenesOut_mRNAname.pl
augustus/scripts/filterInFrameStopCodons.pl
augustus/scripts/filterMaf.pl
augustus/scripts/filterPSL.pl
augustus/scripts/filterShrimp.pl
augustus/scripts/filterSpliceHints.pl
augustus/scripts/findGffNamesInFasta.pl
augustus/scripts/findRepetitiveProtSeqs.py
augustus/scripts/fix_in_frame_stop_codon_genes.py
augustus/scripts/fix_joingenes_gtf.pl
augustus/scripts/gbSmallDNA2gff.pl
augustus/scripts/gbrowse.conf
augustus/scripts/gbrowseold2gff3.pl
augustus/scripts/getAnnoFasta.pl
augustus/scripts/getAnnoFastaFromJoingenes.py
augustus/scripts/getLinesMatching.pl
augustus/scripts/get_loci_from_gb.pl
augustus/scripts/gff2gbSmallDNA.pl
augustus/scripts/gff2ps_mycustom
augustus/scripts/gffGetmRNA.pl
augustus/scripts/gp2othergp.pl
augustus/scripts/gtf2aa.pl
augustus/scripts/gtf2bed.pl
augustus/scripts/gtf2gff.pl
augustus/scripts/gth2gtf.pl
augustus/scripts/hal2maf_split.pl
augustus/scripts/helpMod.pm
augustus/scripts/joinPeptides.pl
augustus/scripts/join_aug_pred.pl
augustus/scripts/join_mult_hints.pl
augustus/scripts/maf2conswig.pl
augustus/scripts/makeMatchLists.pl
augustus/scripts/makeUtrTrainingSet.pl
augustus/scripts/maskNregions.pl
augustus/scripts/merge_masking.pl
augustus/scripts/moveParameters.pl
augustus/scripts/msa2prfl.pl
augustus/scripts/new_species.pl
augustus/scripts/opt_init_and_term_probs.pl
augustus/scripts/optimize_augustus.pl
augustus/scripts/parseSim4Output.pl
augustus/scripts/partition_gtf2gb.pl
augustus/scripts/pasapolyA2hints.pl
augustus/scripts/peptides2alternatives.pl
augustus/scripts/peptides2hints.pl
augustus/scripts/phastconsDB2hints.pl
augustus/scripts/polyA2hints.pl
augustus/scripts/prints2prfl.pl
augustus/scripts/pslMap.pl
augustus/scripts/randomSplit.pl
augustus/scripts/rename_species.pl
augustus/scripts/retroDB2hints.pl
augustus/scripts/rmRedundantHints.pl
augustus/scripts/runAllSim4.pl
augustus/scripts/samMap.pl
augustus/scripts/scipiogff2gff.pl
augustus/scripts/setStopCodonFreqs.pl
augustus/scripts/simpleFastaHeaders.pl
augustus/scripts/simplifyFastaHeaders.pl
augustus/scripts/splitMfasta.pl
augustus/scripts/split_wiggle.pl
augustus/scripts/stringtie2fa.py
augustus/scripts/summarizeACGTcontent.pl
augustus/scripts/transMap2hints.pl
augustus/scripts/uniquePeptides.pl
augustus/scripts/utrgff2gbrowse.pl
augustus/scripts/webserver-results.head
augustus/scripts/webserver-results.tail
augustus/scripts/weedMaf.pl
augustus/scripts/wig2hints.pl
augustus/scripts/wigchoose.pl
augustus/scripts/writeResultsPage.pl
augustus/scripts/yaml2gff.1.4.pl
bin/augustus
bin/etraining
bin/fastBlockSearch
bin/getSeq
bin/load2db
bin/prepareAlign